Hb_022092_070

Information

Type -
Description -
Location Contig22092: 37503-40713
Sequence    

Annotation

kegg
ID rcu:RCOM_1176020
description Indole-3-acetic acid-amido synthetase GH3.5, putative
nr
ID XP_012088334.1
description PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5 [Jatropha curcas]
swissprot
ID Q6I581
description Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1
trembl
ID A0A067JJM2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25828 PE=4 SV=1
Gene Ontology
ID GO:0009507
description probable indole-3-acetic acid-amido synthetase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22750: 38021-39412 , PASA_asmbl_22751: 40491-40688 , PASA_asmbl_22752: 40844-41107
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022092_070 0.0 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5 [Jatropha curcas]
2 Hb_008518_060 0.0831204221 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
3 Hb_005066_040 0.0851301765 - - Reticuline oxidase precursor, putative [Ricinus communis]
4 Hb_000260_520 0.0877988602 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_001186_040 0.0954209539 - - Peroxidase 3 precursor, putative [Ricinus communis]
6 Hb_005000_150 0.1000170576 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008695_060 0.101133629 - - unknown [Populus trichocarpa x Populus deltoides]
8 Hb_008705_080 0.1025453857 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
9 Hb_140595_020 0.1060664383 - - PREDICTED: vegetative cell wall protein gp1-like [Solanum lycopersicum]
10 Hb_009315_010 0.1069444991 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
11 Hb_001366_360 0.1090454052 - - catalytic, putative [Ricinus communis]
12 Hb_001163_010 0.1093597259 - - PREDICTED: syncoilin [Jatropha curcas]
13 Hb_000029_210 0.1095285545 - - protein binding protein, putative [Ricinus communis]
14 Hb_001123_300 0.1100307911 - - hypothetical protein POPTR_0003s16270g [Populus trichocarpa]
15 Hb_005062_100 0.1110099154 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
16 Hb_000427_020 0.1121324355 - - PsbA, partial [Dianthus pygmaeus]
17 Hb_002170_030 0.1130603731 - - PREDICTED: laccase-4-like [Jatropha curcas]
18 Hb_026198_080 0.1136946911 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
19 Hb_000462_040 0.1137769639 - - ATSMC2, putative [Ricinus communis]
20 Hb_029587_010 0.1138657471 - - G-type lectin S-receptor-like serine/threonine-protein kinase [Glycine soja]

Gene co-expression network

sample Hb_022092_070 Hb_022092_070 Hb_008518_060 Hb_008518_060 Hb_022092_070--Hb_008518_060 Hb_005066_040 Hb_005066_040 Hb_022092_070--Hb_005066_040 Hb_000260_520 Hb_000260_520 Hb_022092_070--Hb_000260_520 Hb_001186_040 Hb_001186_040 Hb_022092_070--Hb_001186_040 Hb_005000_150 Hb_005000_150 Hb_022092_070--Hb_005000_150 Hb_008695_060 Hb_008695_060 Hb_022092_070--Hb_008695_060 Hb_000029_210 Hb_000029_210 Hb_008518_060--Hb_000029_210 Hb_001053_120 Hb_001053_120 Hb_008518_060--Hb_001053_120 Hb_001163_010 Hb_001163_010 Hb_008518_060--Hb_001163_010 Hb_005062_100 Hb_005062_100 Hb_008518_060--Hb_005062_100 Hb_001397_020 Hb_001397_020 Hb_008518_060--Hb_001397_020 Hb_002170_030 Hb_002170_030 Hb_008518_060--Hb_002170_030 Hb_005843_010 Hb_005843_010 Hb_005066_040--Hb_005843_010 Hb_009315_010 Hb_009315_010 Hb_005066_040--Hb_009315_010 Hb_002119_150 Hb_002119_150 Hb_005066_040--Hb_002119_150 Hb_005066_040--Hb_008518_060 Hb_000739_280 Hb_000739_280 Hb_005066_040--Hb_000739_280 Hb_140595_020 Hb_140595_020 Hb_000260_520--Hb_140595_020 Hb_001104_070 Hb_001104_070 Hb_000260_520--Hb_001104_070 Hb_000260_520--Hb_005062_100 Hb_140595_030 Hb_140595_030 Hb_000260_520--Hb_140595_030 Hb_018487_040 Hb_018487_040 Hb_000260_520--Hb_018487_040 Hb_000260_520--Hb_002119_150 Hb_001186_040--Hb_140595_020 Hb_001186_040--Hb_140595_030 Hb_000230_490 Hb_000230_490 Hb_001186_040--Hb_000230_490 Hb_001186_040--Hb_000260_520 Hb_008727_060 Hb_008727_060 Hb_001186_040--Hb_008727_060 Hb_001140_290 Hb_001140_290 Hb_005000_150--Hb_001140_290 Hb_002151_070 Hb_002151_070 Hb_005000_150--Hb_002151_070 Hb_001514_050 Hb_001514_050 Hb_005000_150--Hb_001514_050 Hb_003152_020 Hb_003152_020 Hb_005000_150--Hb_003152_020 Hb_005000_150--Hb_001397_020 Hb_001289_070 Hb_001289_070 Hb_005000_150--Hb_001289_070 Hb_001123_300 Hb_001123_300 Hb_008695_060--Hb_001123_300 Hb_028818_020 Hb_028818_020 Hb_008695_060--Hb_028818_020 Hb_008705_080 Hb_008705_080 Hb_008695_060--Hb_008705_080 Hb_001105_150 Hb_001105_150 Hb_008695_060--Hb_001105_150 Hb_008695_060--Hb_002170_030 Hb_000155_230 Hb_000155_230 Hb_008695_060--Hb_000155_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0108842 1.35859 2.24708 11.7283 0.173946 0.0909962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0387709 17.5287

CAGE analysis