Hb_000739_280

Information

Type -
Description -
Location Contig739: 256012-257719
Sequence    

Annotation

kegg
ID rcu:RCOM_1612540
description alcohol dehydrogenase, putative (EC:1.6.5.5)
nr
ID XP_002511744.1
description alcohol dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9ZUC1
description Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=2 SV=2
trembl
ID B9RDF5
description Alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_1612540 PE=4 SV=1
Gene Ontology
ID GO:0003960
description 2-methylene-furan-3-one reductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56301: 252903-256471 , PASA_asmbl_56302: 256057-257693
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000739_280 0.0 - - alcohol dehydrogenase, putative [Ricinus communis]
2 Hb_005062_100 0.0771159029 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
3 Hb_001488_160 0.0865908263 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
4 Hb_005066_040 0.0920555487 - - Reticuline oxidase precursor, putative [Ricinus communis]
5 Hb_000002_110 0.0955917612 - - hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]
6 Hb_001699_110 0.0956336259 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
7 Hb_000260_520 0.0963314638 - - receptor protein kinase, putative [Ricinus communis]
8 Hb_000538_110 0.0973035117 - - sucrose synthase 1 [Hevea brasiliensis]
9 Hb_018487_040 0.0973084543 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
10 Hb_001711_140 0.0982319304 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
11 Hb_011214_080 0.0982392032 - - sucrose synthase 1 [Hevea brasiliensis]
12 Hb_003090_240 0.0983787608 - - hypothetical protein JCGZ_25095 [Jatropha curcas]
13 Hb_002329_050 0.0985889659 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005483_040 0.101442514 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
15 Hb_144550_010 0.1028080187 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
16 Hb_011362_010 0.1036215424 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
17 Hb_002119_150 0.1044146944 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
18 Hb_033681_030 0.1054347217 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
19 Hb_008518_060 0.1085847397 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
20 Hb_009315_010 0.1091457626 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_000739_280 Hb_000739_280 Hb_005062_100 Hb_005062_100 Hb_000739_280--Hb_005062_100 Hb_001488_160 Hb_001488_160 Hb_000739_280--Hb_001488_160 Hb_005066_040 Hb_005066_040 Hb_000739_280--Hb_005066_040 Hb_000002_110 Hb_000002_110 Hb_000739_280--Hb_000002_110 Hb_001699_110 Hb_001699_110 Hb_000739_280--Hb_001699_110 Hb_000260_520 Hb_000260_520 Hb_000739_280--Hb_000260_520 Hb_000029_210 Hb_000029_210 Hb_005062_100--Hb_000029_210 Hb_008518_060 Hb_008518_060 Hb_005062_100--Hb_008518_060 Hb_000023_100 Hb_000023_100 Hb_005062_100--Hb_000023_100 Hb_011362_010 Hb_011362_010 Hb_005062_100--Hb_011362_010 Hb_005062_100--Hb_000260_520 Hb_005675_030 Hb_005675_030 Hb_001488_160--Hb_005675_030 Hb_001488_160--Hb_001699_110 Hb_018487_040 Hb_018487_040 Hb_001488_160--Hb_018487_040 Hb_011537_130 Hb_011537_130 Hb_001488_160--Hb_011537_130 Hb_080048_030 Hb_080048_030 Hb_001488_160--Hb_080048_030 Hb_005843_010 Hb_005843_010 Hb_005066_040--Hb_005843_010 Hb_009315_010 Hb_009315_010 Hb_005066_040--Hb_009315_010 Hb_022092_070 Hb_022092_070 Hb_005066_040--Hb_022092_070 Hb_002119_150 Hb_002119_150 Hb_005066_040--Hb_002119_150 Hb_005066_040--Hb_008518_060 Hb_001433_090 Hb_001433_090 Hb_000002_110--Hb_001433_090 Hb_010589_010 Hb_010589_010 Hb_000002_110--Hb_010589_010 Hb_001500_130 Hb_001500_130 Hb_000002_110--Hb_001500_130 Hb_001397_020 Hb_001397_020 Hb_000002_110--Hb_001397_020 Hb_005183_050 Hb_005183_050 Hb_000002_110--Hb_005183_050 Hb_020956_030 Hb_020956_030 Hb_000002_110--Hb_020956_030 Hb_001699_110--Hb_005675_030 Hb_000958_090 Hb_000958_090 Hb_001699_110--Hb_000958_090 Hb_006291_050 Hb_006291_050 Hb_001699_110--Hb_006291_050 Hb_000389_170 Hb_000389_170 Hb_001699_110--Hb_000389_170 Hb_001699_110--Hb_005843_010 Hb_140595_020 Hb_140595_020 Hb_000260_520--Hb_140595_020 Hb_001104_070 Hb_001104_070 Hb_000260_520--Hb_001104_070 Hb_140595_030 Hb_140595_030 Hb_000260_520--Hb_140595_030 Hb_000260_520--Hb_018487_040 Hb_000260_520--Hb_002119_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0704959 7.19309 32.5636 80.584 0 0.0494318
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.120748 1.96298 0.0589179 1.07793 163.215

CAGE analysis