Hb_001433_090

Information

Type -
Description -
Location Contig1433: 95342-103480
Sequence    

Annotation

kegg
ID rcu:RCOM_1433960
description Pectinesterase PPE8B precursor, putative (EC:3.1.1.11)
nr
ID XP_002512462.1
description Pectinesterase PPE8B precursor, putative [Ricinus communis]
swissprot
ID Q9M9W7
description Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1
trembl
ID B9RFE3
description Pectinesterase OS=Ricinus communis GN=RCOM_1433960 PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectinesterase pectinesterase inhibitor 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11400: 100898-101369 , PASA_asmbl_11401: 101676-103271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001433_090 0.0 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
2 Hb_026549_060 0.0541052426 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
3 Hb_000002_110 0.0575756746 - - hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]
4 Hb_010589_010 0.0581764284 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
5 Hb_005183_050 0.0589079284 - - hypothetical protein RCOM_1590900 [Ricinus communis]
6 Hb_001500_130 0.0644005755 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
7 Hb_020956_030 0.0664419659 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
8 Hb_001541_200 0.0680309825 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
9 Hb_001657_020 0.0705187548 - - heat shock family protein [Populus trichocarpa]
10 Hb_005010_030 0.0740471347 - - PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]
11 Hb_000017_180 0.0770092652 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
12 Hb_003152_020 0.0772334932 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
13 Hb_001397_020 0.0777364752 - - cytochrome P450 family protein [Populus trichocarpa]
14 Hb_002477_190 0.0812063283 - - hypothetical protein EUGRSUZ_C03380, partial [Eucalyptus grandis]
15 Hb_005842_010 0.0820166691 - - nitrate transporter, putative [Ricinus communis]
16 Hb_136408_040 0.0843603717 - - PREDICTED: protein NDR1 [Jatropha curcas]
17 Hb_001711_140 0.0858313102 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
18 Hb_002062_010 0.0864665527 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
19 Hb_003162_060 0.0887332216 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
20 Hb_007163_110 0.0892826383 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]

Gene co-expression network

sample Hb_001433_090 Hb_001433_090 Hb_026549_060 Hb_026549_060 Hb_001433_090--Hb_026549_060 Hb_000002_110 Hb_000002_110 Hb_001433_090--Hb_000002_110 Hb_010589_010 Hb_010589_010 Hb_001433_090--Hb_010589_010 Hb_005183_050 Hb_005183_050 Hb_001433_090--Hb_005183_050 Hb_001500_130 Hb_001500_130 Hb_001433_090--Hb_001500_130 Hb_020956_030 Hb_020956_030 Hb_001433_090--Hb_020956_030 Hb_001541_200 Hb_001541_200 Hb_026549_060--Hb_001541_200 Hb_000958_090 Hb_000958_090 Hb_026549_060--Hb_000958_090 Hb_026549_060--Hb_020956_030 Hb_026549_060--Hb_005183_050 Hb_005010_030 Hb_005010_030 Hb_026549_060--Hb_005010_030 Hb_000002_110--Hb_010589_010 Hb_000002_110--Hb_001500_130 Hb_001397_020 Hb_001397_020 Hb_000002_110--Hb_001397_020 Hb_000002_110--Hb_005183_050 Hb_000002_110--Hb_020956_030 Hb_010589_010--Hb_001397_020 Hb_029587_010 Hb_029587_010 Hb_010589_010--Hb_029587_010 Hb_003549_100 Hb_003549_100 Hb_010589_010--Hb_003549_100 Hb_010589_010--Hb_001500_130 Hb_000017_180 Hb_000017_180 Hb_005183_050--Hb_000017_180 Hb_003152_020 Hb_003152_020 Hb_005183_050--Hb_003152_020 Hb_005842_010 Hb_005842_010 Hb_005183_050--Hb_005842_010 Hb_001500_130--Hb_005010_030 Hb_000083_210 Hb_000083_210 Hb_001500_130--Hb_000083_210 Hb_002477_190 Hb_002477_190 Hb_001500_130--Hb_002477_190 Hb_003162_060 Hb_003162_060 Hb_020956_030--Hb_003162_060 Hb_020956_030--Hb_001541_200 Hb_086300_010 Hb_086300_010 Hb_020956_030--Hb_086300_010 Hb_001657_020 Hb_001657_020 Hb_020956_030--Hb_001657_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.408142 1.67851 4.00056 0.0217288 0.00515922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0991537 5.19907

CAGE analysis