Hb_001541_200

Information

Type -
Description -
Location Contig1541: 188876-191762
Sequence    

Annotation

kegg
ID cit:102615523
description BTB/POZ domain-containing protein At1g67900-like
nr
ID XP_006483950.1
description PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
swissprot
ID Q9C9V6
description BTB/POZ domain-containing protein At1g67900 OS=Arabidopsis thaliana GN=At1g67900 PE=1 SV=1
trembl
ID A0A067H3W3
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006846mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13294: 188364-189721
cDNA
(Sanger)
(ID:Location)		 050_O08.ab1: 188364-189609

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_200 0.0 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
2 Hb_001657_020 0.0575270378 - - heat shock family protein [Populus trichocarpa]
3 Hb_026549_060 0.061060609 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
4 Hb_020956_030 0.0641812156 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
5 Hb_001433_090 0.0680309825 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
6 Hb_005183_050 0.0803680618 - - hypothetical protein RCOM_1590900 [Ricinus communis]
7 Hb_003162_060 0.0852937746 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
8 Hb_000002_110 0.0874288509 - - hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]
9 Hb_001500_130 0.0885432013 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
10 Hb_136408_040 0.0894087611 - - PREDICTED: protein NDR1 [Jatropha curcas]
11 Hb_003152_020 0.0927126813 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
12 Hb_005532_030 0.0939864046 - - DNA binding protein, putative [Ricinus communis]
13 Hb_000083_210 0.0949220554 - - Major facilitator superfamily protein, putative [Theobroma cacao]
14 Hb_000139_060 0.0962426293 - - Photosystem I reaction center subunit II, chloroplast precursor, putative [Ricinus communis]
15 Hb_005842_010 0.0975943114 - - nitrate transporter, putative [Ricinus communis]
16 Hb_002246_030 0.0978775816 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
17 Hb_000608_190 0.098124721 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]
18 Hb_000670_070 0.0996630644 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
19 Hb_000958_090 0.0997755636 - - PREDICTED: cation/H(+) antiporter 28 [Jatropha curcas]
20 Hb_001557_010 0.1007317016 - - PREDICTED: extensin [Jatropha curcas]

Gene co-expression network

sample Hb_001541_200 Hb_001541_200 Hb_001657_020 Hb_001657_020 Hb_001541_200--Hb_001657_020 Hb_026549_060 Hb_026549_060 Hb_001541_200--Hb_026549_060 Hb_020956_030 Hb_020956_030 Hb_001541_200--Hb_020956_030 Hb_001433_090 Hb_001433_090 Hb_001541_200--Hb_001433_090 Hb_005183_050 Hb_005183_050 Hb_001541_200--Hb_005183_050 Hb_003162_060 Hb_003162_060 Hb_001541_200--Hb_003162_060 Hb_001657_020--Hb_001433_090 Hb_001657_020--Hb_020956_030 Hb_001657_020--Hb_005183_050 Hb_003152_020 Hb_003152_020 Hb_001657_020--Hb_003152_020 Hb_001657_020--Hb_026549_060 Hb_026549_060--Hb_001433_090 Hb_000958_090 Hb_000958_090 Hb_026549_060--Hb_000958_090 Hb_026549_060--Hb_020956_030 Hb_026549_060--Hb_005183_050 Hb_005010_030 Hb_005010_030 Hb_026549_060--Hb_005010_030 Hb_020956_030--Hb_003162_060 Hb_020956_030--Hb_001433_090 Hb_086300_010 Hb_086300_010 Hb_020956_030--Hb_086300_010 Hb_000002_110 Hb_000002_110 Hb_001433_090--Hb_000002_110 Hb_010589_010 Hb_010589_010 Hb_001433_090--Hb_010589_010 Hb_001433_090--Hb_005183_050 Hb_001500_130 Hb_001500_130 Hb_001433_090--Hb_001500_130 Hb_000017_180 Hb_000017_180 Hb_005183_050--Hb_000017_180 Hb_005183_050--Hb_000002_110 Hb_005183_050--Hb_003152_020 Hb_005842_010 Hb_005842_010 Hb_005183_050--Hb_005842_010 Hb_003162_060--Hb_086300_010 Hb_005532_030 Hb_005532_030 Hb_003162_060--Hb_005532_030 Hb_003162_060--Hb_026549_060 Hb_001141_100 Hb_001141_100 Hb_003162_060--Hb_001141_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.143505 2.32719 8.19759 18.847 0.246136 0.092952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0396594 0.0468097 0.0593523 0.998391 27.061

CAGE analysis