Hb_020956_030

Information

Type -
Description -
Location Contig20956: 33299-35255
Sequence    

Annotation

kegg
ID pop:POPTR_0004s20250g
description heat shock family protein
nr
ID XP_012066393.1
description PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
swissprot
ID D9UC01
description Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana GN=RTM2 PE=3 SV=1
trembl
ID A0A067L3C2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23864 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21675: 33853-35156
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020956_030 0.0 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
2 Hb_003162_060 0.0316082777 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
3 Hb_001541_200 0.0641812156 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
4 Hb_001433_090 0.0664419659 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
5 Hb_026549_060 0.0692829924 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
6 Hb_086300_010 0.0725529564 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
7 Hb_001657_020 0.0735574814 - - heat shock family protein [Populus trichocarpa]
8 Hb_005532_030 0.0809293276 - - DNA binding protein, putative [Ricinus communis]
9 Hb_000002_110 0.0819429179 - - hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]
10 Hb_033681_030 0.0859323203 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
11 Hb_001500_130 0.0860530684 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
12 Hb_005183_050 0.0910539551 - - hypothetical protein RCOM_1590900 [Ricinus communis]
13 Hb_005010_030 0.0932930169 - - PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]
14 Hb_000076_240 0.0946760442 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
15 Hb_008195_090 0.0954675907 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000670_070 0.0958628377 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
17 Hb_027472_060 0.0972479638 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
18 Hb_002477_190 0.0972894421 - - hypothetical protein EUGRSUZ_C03380, partial [Eucalyptus grandis]
19 Hb_000958_090 0.0978450312 - - PREDICTED: cation/H(+) antiporter 28 [Jatropha curcas]
20 Hb_000424_140 0.0983092528 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_020956_030 Hb_020956_030 Hb_003162_060 Hb_003162_060 Hb_020956_030--Hb_003162_060 Hb_001541_200 Hb_001541_200 Hb_020956_030--Hb_001541_200 Hb_001433_090 Hb_001433_090 Hb_020956_030--Hb_001433_090 Hb_026549_060 Hb_026549_060 Hb_020956_030--Hb_026549_060 Hb_086300_010 Hb_086300_010 Hb_020956_030--Hb_086300_010 Hb_001657_020 Hb_001657_020 Hb_020956_030--Hb_001657_020 Hb_003162_060--Hb_086300_010 Hb_005532_030 Hb_005532_030 Hb_003162_060--Hb_005532_030 Hb_003162_060--Hb_026549_060 Hb_003162_060--Hb_001541_200 Hb_001141_100 Hb_001141_100 Hb_003162_060--Hb_001141_100 Hb_001541_200--Hb_001657_020 Hb_001541_200--Hb_026549_060 Hb_001541_200--Hb_001433_090 Hb_005183_050 Hb_005183_050 Hb_001541_200--Hb_005183_050 Hb_001433_090--Hb_026549_060 Hb_000002_110 Hb_000002_110 Hb_001433_090--Hb_000002_110 Hb_010589_010 Hb_010589_010 Hb_001433_090--Hb_010589_010 Hb_001433_090--Hb_005183_050 Hb_001500_130 Hb_001500_130 Hb_001433_090--Hb_001500_130 Hb_000958_090 Hb_000958_090 Hb_026549_060--Hb_000958_090 Hb_026549_060--Hb_005183_050 Hb_005010_030 Hb_005010_030 Hb_026549_060--Hb_005010_030 Hb_147028_010 Hb_147028_010 Hb_086300_010--Hb_147028_010 Hb_028491_010 Hb_028491_010 Hb_086300_010--Hb_028491_010 Hb_086300_010--Hb_005532_030 Hb_033681_030 Hb_033681_030 Hb_086300_010--Hb_033681_030 Hb_001657_020--Hb_001433_090 Hb_001657_020--Hb_005183_050 Hb_003152_020 Hb_003152_020 Hb_001657_020--Hb_003152_020 Hb_001657_020--Hb_026549_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0205137 0.629169 3.82786 7.35187 0.0397991 0.0361083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.068216 0.266839 11.7559

CAGE analysis