Hb_001657_020

Information

Type -
Description -
Location Contig1657: 16199-18430
Sequence    

Annotation

kegg
ID pop:POPTR_0004s20250g
description heat shock family protein
nr
ID XP_006384694.1
description heat shock family protein [Populus trichocarpa]
swissprot
ID D9UC01
description Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana GN=RTM2 PE=3 SV=1
trembl
ID B9MYM7
description Heat shock family protein OS=Populus trichocarpa GN=POPTR_0004s20250g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001657_020 0.0 - - heat shock family protein [Populus trichocarpa]
2 Hb_001541_200 0.0575270378 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
3 Hb_001433_090 0.0705187548 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
4 Hb_020956_030 0.0735574814 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
5 Hb_005183_050 0.078260248 - - hypothetical protein RCOM_1590900 [Ricinus communis]
6 Hb_003152_020 0.0796318465 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
7 Hb_026549_060 0.0800488687 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
8 Hb_000002_110 0.0844811777 - - hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]
9 Hb_000076_240 0.0883814134 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
10 Hb_001397_020 0.08931856 - - cytochrome P450 family protein [Populus trichocarpa]
11 Hb_000358_090 0.0929102862 - - zinc finger protein, putative [Ricinus communis]
12 Hb_136408_040 0.0929486323 - - PREDICTED: protein NDR1 [Jatropha curcas]
13 Hb_010589_010 0.0942141336 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
14 Hb_000670_070 0.094451094 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
15 Hb_003162_060 0.0953972929 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
16 Hb_005000_150 0.0954484338 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005066_040 0.0970447325 - - Reticuline oxidase precursor, putative [Ricinus communis]
18 Hb_000608_190 0.0994663918 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]
19 Hb_001500_130 0.107451238 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
20 Hb_000139_060 0.1078679357 - - Photosystem I reaction center subunit II, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001657_020 Hb_001657_020 Hb_001541_200 Hb_001541_200 Hb_001657_020--Hb_001541_200 Hb_001433_090 Hb_001433_090 Hb_001657_020--Hb_001433_090 Hb_020956_030 Hb_020956_030 Hb_001657_020--Hb_020956_030 Hb_005183_050 Hb_005183_050 Hb_001657_020--Hb_005183_050 Hb_003152_020 Hb_003152_020 Hb_001657_020--Hb_003152_020 Hb_026549_060 Hb_026549_060 Hb_001657_020--Hb_026549_060 Hb_001541_200--Hb_026549_060 Hb_001541_200--Hb_020956_030 Hb_001541_200--Hb_001433_090 Hb_001541_200--Hb_005183_050 Hb_003162_060 Hb_003162_060 Hb_001541_200--Hb_003162_060 Hb_001433_090--Hb_026549_060 Hb_000002_110 Hb_000002_110 Hb_001433_090--Hb_000002_110 Hb_010589_010 Hb_010589_010 Hb_001433_090--Hb_010589_010 Hb_001433_090--Hb_005183_050 Hb_001500_130 Hb_001500_130 Hb_001433_090--Hb_001500_130 Hb_001433_090--Hb_020956_030 Hb_020956_030--Hb_003162_060 Hb_020956_030--Hb_026549_060 Hb_086300_010 Hb_086300_010 Hb_020956_030--Hb_086300_010 Hb_000017_180 Hb_000017_180 Hb_005183_050--Hb_000017_180 Hb_005183_050--Hb_000002_110 Hb_005183_050--Hb_003152_020 Hb_005183_050--Hb_026549_060 Hb_005842_010 Hb_005842_010 Hb_005183_050--Hb_005842_010 Hb_001397_020 Hb_001397_020 Hb_003152_020--Hb_001397_020 Hb_007163_110 Hb_007163_110 Hb_003152_020--Hb_007163_110 Hb_136408_040 Hb_136408_040 Hb_003152_020--Hb_136408_040 Hb_003152_020--Hb_010589_010 Hb_002809_180 Hb_002809_180 Hb_003152_020--Hb_002809_180 Hb_005000_150 Hb_005000_150 Hb_003152_020--Hb_005000_150 Hb_000958_090 Hb_000958_090 Hb_026549_060--Hb_000958_090 Hb_005010_030 Hb_005010_030 Hb_026549_060--Hb_005010_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.141392 0.95848 3.46924 9.57912 0.0422083 0.0383135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.425208 14.2791

CAGE analysis