Hb_147028_010

Information

Type transcription factor
Description TF Family: HB
Location Contig147028: 3646-4813
Sequence    

Annotation

kegg
ID pmum:103337382
description homeobox protein HD1
nr
ID XP_008238758.1
description PREDICTED: homeobox protein HD1 [Prunus mume]
swissprot
ID P46606
description Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2 SV=1
trembl
ID M5WA76
description KNOPE7 OS=Prunus persica GN=KNOPE7 PE=2 SV=1
Gene Ontology
ID GO:0005634
description homeobox protein hd1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11919: 3669-4899
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_147028_010 0.0 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Prunus mume]
2 Hb_001141_100 0.0556609904 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
3 Hb_028491_010 0.0572833396 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
4 Hb_000803_080 0.0659922802 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]
5 Hb_001277_130 0.0675906137 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
6 Hb_086300_010 0.0708962855 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
7 Hb_001735_040 0.075287642 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
8 Hb_001199_110 0.0762509349 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
9 Hb_006831_090 0.0762849276 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
10 Hb_008536_020 0.0762918125 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
11 Hb_002374_180 0.076901975 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
12 Hb_008847_050 0.0771791123 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004607_110 0.0787946758 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
14 Hb_002600_170 0.0828807563 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003025_160 0.0836644751 - - Protein HVA22, putative [Ricinus communis]
16 Hb_000418_130 0.0839118954 - - PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Jatropha curcas]
17 Hb_000329_780 0.0860097294 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
18 Hb_005532_030 0.0861449258 - - DNA binding protein, putative [Ricinus communis]
19 Hb_003913_120 0.0884904152 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
20 Hb_000042_280 0.0890348043 - - chlorophyll A/B binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_147028_010 Hb_147028_010 Hb_001141_100 Hb_001141_100 Hb_147028_010--Hb_001141_100 Hb_028491_010 Hb_028491_010 Hb_147028_010--Hb_028491_010 Hb_000803_080 Hb_000803_080 Hb_147028_010--Hb_000803_080 Hb_001277_130 Hb_001277_130 Hb_147028_010--Hb_001277_130 Hb_086300_010 Hb_086300_010 Hb_147028_010--Hb_086300_010 Hb_001735_040 Hb_001735_040 Hb_147028_010--Hb_001735_040 Hb_001141_100--Hb_028491_010 Hb_008847_050 Hb_008847_050 Hb_001141_100--Hb_008847_050 Hb_004607_110 Hb_004607_110 Hb_001141_100--Hb_004607_110 Hb_001141_100--Hb_001277_130 Hb_009193_070 Hb_009193_070 Hb_001141_100--Hb_009193_070 Hb_028491_010--Hb_004607_110 Hb_029991_010 Hb_029991_010 Hb_028491_010--Hb_029991_010 Hb_028491_010--Hb_001277_130 Hb_028491_010--Hb_008847_050 Hb_003913_120 Hb_003913_120 Hb_000803_080--Hb_003913_120 Hb_004807_010 Hb_004807_010 Hb_000803_080--Hb_004807_010 Hb_000803_080--Hb_028491_010 Hb_000803_080--Hb_004607_110 Hb_012098_120 Hb_012098_120 Hb_000803_080--Hb_012098_120 Hb_001277_130--Hb_008847_050 Hb_002259_090 Hb_002259_090 Hb_001277_130--Hb_002259_090 Hb_001277_130--Hb_004607_110 Hb_020956_030 Hb_020956_030 Hb_086300_010--Hb_020956_030 Hb_003162_060 Hb_003162_060 Hb_086300_010--Hb_003162_060 Hb_086300_010--Hb_028491_010 Hb_005532_030 Hb_005532_030 Hb_086300_010--Hb_005532_030 Hb_033681_030 Hb_033681_030 Hb_086300_010--Hb_033681_030 Hb_007537_040 Hb_007537_040 Hb_001735_040--Hb_007537_040 Hb_001735_040--Hb_028491_010 Hb_000418_130 Hb_000418_130 Hb_001735_040--Hb_000418_130 Hb_008225_050 Hb_008225_050 Hb_001735_040--Hb_008225_050 Hb_001735_040--Hb_004607_110 Hb_001735_040--Hb_029991_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.77567 21.7309 22.4589 0.152998 0.385264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.354746 38.5542

CAGE analysis