Hb_009315_010

Information

Type -
Description -
Location Contig9315: 11106-13381
Sequence    

Annotation

kegg
ID pop:POPTR_1763s00200g
description hypothetical protein
nr
ID XP_006387127.1
description hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
swissprot
ID Q8LPB4
description Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1
trembl
ID U7DYW7
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_1763s00200g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62858: 10773-11234
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009315_010 0.0 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
2 Hb_001711_140 0.0567630137 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
3 Hb_000462_010 0.0600022897 - - hypothetical protein VITISV_041696 [Vitis vinifera]
4 Hb_005843_010 0.0636120646 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
5 Hb_005678_020 0.067696143 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_036790_110 0.0776552759 - - hypothetical protein JCGZ_22271 [Jatropha curcas]
7 Hb_005010_030 0.0806791465 - - PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]
8 Hb_005066_040 0.0827577351 - - Reticuline oxidase precursor, putative [Ricinus communis]
9 Hb_008727_060 0.0859326001 - - Beta-glucosidase, putative [Ricinus communis]
10 Hb_001699_110 0.0945309474 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
11 Hb_002477_190 0.0957317224 - - hypothetical protein EUGRSUZ_C03380, partial [Eucalyptus grandis]
12 Hb_000708_020 0.0996393964 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
13 Hb_005288_100 0.10025589 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
14 Hb_029587_010 0.1026816683 - - G-type lectin S-receptor-like serine/threonine-protein kinase [Glycine soja]
15 Hb_022092_070 0.1069444991 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5 [Jatropha curcas]
16 Hb_000739_280 0.1091457626 - - alcohol dehydrogenase, putative [Ricinus communis]
17 Hb_000260_520 0.1100832005 - - receptor protein kinase, putative [Ricinus communis]
18 Hb_001433_090 0.1124305819 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
19 Hb_026549_060 0.1149935979 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
20 Hb_000958_090 0.1152070048 - - PREDICTED: cation/H(+) antiporter 28 [Jatropha curcas]

Gene co-expression network

sample Hb_009315_010 Hb_009315_010 Hb_001711_140 Hb_001711_140 Hb_009315_010--Hb_001711_140 Hb_000462_010 Hb_000462_010 Hb_009315_010--Hb_000462_010 Hb_005843_010 Hb_005843_010 Hb_009315_010--Hb_005843_010 Hb_005678_020 Hb_005678_020 Hb_009315_010--Hb_005678_020 Hb_036790_110 Hb_036790_110 Hb_009315_010--Hb_036790_110 Hb_005010_030 Hb_005010_030 Hb_009315_010--Hb_005010_030 Hb_002477_190 Hb_002477_190 Hb_001711_140--Hb_002477_190 Hb_001711_140--Hb_005010_030 Hb_029587_010 Hb_029587_010 Hb_001711_140--Hb_029587_010 Hb_001711_140--Hb_000462_010 Hb_001711_140--Hb_005843_010 Hb_000462_010--Hb_005678_020 Hb_000462_010--Hb_005010_030 Hb_000462_010--Hb_005843_010 Hb_000462_010--Hb_036790_110 Hb_005843_010--Hb_005678_020 Hb_005843_010--Hb_005010_030 Hb_000708_020 Hb_000708_020 Hb_005843_010--Hb_000708_020 Hb_005066_040 Hb_005066_040 Hb_005843_010--Hb_005066_040 Hb_005678_020--Hb_005010_030 Hb_005678_020--Hb_036790_110 Hb_005678_020--Hb_000708_020 Hb_005288_100 Hb_005288_100 Hb_036790_110--Hb_005288_100 Hb_036790_110--Hb_005843_010 Hb_003008_020 Hb_003008_020 Hb_036790_110--Hb_003008_020 Hb_005010_030--Hb_002477_190 Hb_006615_090 Hb_006615_090 Hb_005010_030--Hb_006615_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.037493 0.0702842 0.189531 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.331197

CAGE analysis