Hb_036790_110

Information

Type -
Description -
Location Contig36790: 83632-87017
Sequence    

Annotation

kegg
ID rcu:RCOM_0296440
description Leucine-rich repeat receptor protein kinase EXS precursor, putative (EC:2.7.11.30 1.3.1.74)
nr
ID KDP26177.1
description hypothetical protein JCGZ_22271 [Jatropha curcas]
swissprot
ID C0LGF5
description Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2
trembl
ID A0A067JQL2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22271 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at1g34110

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_036790_110 0.0 - - hypothetical protein JCGZ_22271 [Jatropha curcas]
2 Hb_005288_100 0.0387521778 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
3 Hb_005678_020 0.0716599781 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_009315_010 0.0776552759 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
5 Hb_000462_010 0.081375352 - - hypothetical protein VITISV_041696 [Vitis vinifera]
6 Hb_005843_010 0.0848273566 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
7 Hb_003008_020 0.0886465135 - - auxin-responsive family protein [Populus trichocarpa]
8 Hb_008727_060 0.0887974234 - - Beta-glucosidase, putative [Ricinus communis]
9 Hb_000708_020 0.1078843881 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
10 Hb_000271_130 0.1182194346 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
11 Hb_000389_170 0.1197552317 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
12 Hb_000752_040 0.124601814 - - PREDICTED: uncharacterized protein LOC104884990 [Beta vulgaris subsp. vulgaris]
13 Hb_005010_030 0.1269302128 - - PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]
14 Hb_173387_010 0.1269900866 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
15 Hb_001711_140 0.1278922457 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
16 Hb_005066_040 0.1283708205 - - Reticuline oxidase precursor, putative [Ricinus communis]
17 Hb_000395_230 0.1297212166 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Vitis vinifera]
18 Hb_001699_110 0.1307007759 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
19 Hb_007666_010 0.130720861 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
20 Hb_001186_040 0.1309125034 - - Peroxidase 3 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_036790_110 Hb_036790_110 Hb_005288_100 Hb_005288_100 Hb_036790_110--Hb_005288_100 Hb_005678_020 Hb_005678_020 Hb_036790_110--Hb_005678_020 Hb_009315_010 Hb_009315_010 Hb_036790_110--Hb_009315_010 Hb_000462_010 Hb_000462_010 Hb_036790_110--Hb_000462_010 Hb_005843_010 Hb_005843_010 Hb_036790_110--Hb_005843_010 Hb_003008_020 Hb_003008_020 Hb_036790_110--Hb_003008_020 Hb_005288_100--Hb_005678_020 Hb_008727_060 Hb_008727_060 Hb_005288_100--Hb_008727_060 Hb_005288_100--Hb_009315_010 Hb_000389_170 Hb_000389_170 Hb_005288_100--Hb_000389_170 Hb_005288_100--Hb_005843_010 Hb_005678_020--Hb_000462_010 Hb_005678_020--Hb_005843_010 Hb_005678_020--Hb_009315_010 Hb_005010_030 Hb_005010_030 Hb_005678_020--Hb_005010_030 Hb_000708_020 Hb_000708_020 Hb_005678_020--Hb_000708_020 Hb_001711_140 Hb_001711_140 Hb_009315_010--Hb_001711_140 Hb_009315_010--Hb_000462_010 Hb_009315_010--Hb_005843_010 Hb_009315_010--Hb_005010_030 Hb_000462_010--Hb_005010_030 Hb_000462_010--Hb_005843_010 Hb_000462_010--Hb_001711_140 Hb_005843_010--Hb_005010_030 Hb_005843_010--Hb_000708_020 Hb_005066_040 Hb_005066_040 Hb_005843_010--Hb_005066_040 Hb_003050_330 Hb_003050_330 Hb_003008_020--Hb_003050_330 Hb_008689_010 Hb_008689_010 Hb_003008_020--Hb_008689_010 Hb_077774_010 Hb_077774_010 Hb_003008_020--Hb_077774_010 Hb_002193_080 Hb_002193_080 Hb_003008_020--Hb_002193_080 Hb_000752_040 Hb_000752_040 Hb_003008_020--Hb_000752_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00973485 0.00898491 0.0248101 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0450942

CAGE analysis