Hb_005678_020

Information

Type -
Description -
Location Contig5678: 27781-29019
Sequence    

Annotation

kegg
ID rcu:RCOM_0812200
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002518710.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q8W3M4
description Uncharacterized protein At4g06744 OS=Arabidopsis thaliana GN=At4g06744 PE=2 SV=1
trembl
ID B9RYC6
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0812200 PE=4 SV=1
Gene Ontology
ID GO:0016301
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005678_020 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000462_010 0.0361977852 - - hypothetical protein VITISV_041696 [Vitis vinifera]
3 Hb_005843_010 0.0564575283 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
4 Hb_009315_010 0.067696143 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
5 Hb_005010_030 0.0689461118 - - PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]
6 Hb_036790_110 0.0716599781 - - hypothetical protein JCGZ_22271 [Jatropha curcas]
7 Hb_000708_020 0.0816217213 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
8 Hb_005288_100 0.0860289739 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
9 Hb_001711_140 0.0872231606 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
10 Hb_000958_090 0.1002021388 - - PREDICTED: cation/H(+) antiporter 28 [Jatropha curcas]
11 Hb_000749_300 0.1027485222 - - PREDICTED: uncharacterized protein LOC105129180 [Populus euphratica]
12 Hb_173387_010 0.1073259044 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
13 Hb_002477_190 0.108095675 - - hypothetical protein EUGRSUZ_C03380, partial [Eucalyptus grandis]
14 Hb_026549_060 0.1088210674 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
15 Hb_002842_010 0.1091149819 - - sulfate transporter, putative [Ricinus communis]
16 Hb_003008_020 0.1100705743 - - auxin-responsive family protein [Populus trichocarpa]
17 Hb_002400_260 0.1115906268 - - catalytic, putative [Ricinus communis]
18 Hb_001047_210 0.1116827678 - - PSI reaction center subunit II [Citrus sinensis]
19 Hb_000083_210 0.1116837558 - - Major facilitator superfamily protein, putative [Theobroma cacao]
20 Hb_000661_270 0.1120247454 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_005678_020 Hb_005678_020 Hb_000462_010 Hb_000462_010 Hb_005678_020--Hb_000462_010 Hb_005843_010 Hb_005843_010 Hb_005678_020--Hb_005843_010 Hb_009315_010 Hb_009315_010 Hb_005678_020--Hb_009315_010 Hb_005010_030 Hb_005010_030 Hb_005678_020--Hb_005010_030 Hb_036790_110 Hb_036790_110 Hb_005678_020--Hb_036790_110 Hb_000708_020 Hb_000708_020 Hb_005678_020--Hb_000708_020 Hb_000462_010--Hb_005010_030 Hb_000462_010--Hb_009315_010 Hb_000462_010--Hb_005843_010 Hb_001711_140 Hb_001711_140 Hb_000462_010--Hb_001711_140 Hb_000462_010--Hb_036790_110 Hb_005843_010--Hb_009315_010 Hb_005843_010--Hb_005010_030 Hb_005843_010--Hb_000708_020 Hb_005066_040 Hb_005066_040 Hb_005843_010--Hb_005066_040 Hb_009315_010--Hb_001711_140 Hb_009315_010--Hb_036790_110 Hb_009315_010--Hb_005010_030 Hb_005010_030--Hb_001711_140 Hb_002477_190 Hb_002477_190 Hb_005010_030--Hb_002477_190 Hb_006615_090 Hb_006615_090 Hb_005010_030--Hb_006615_090 Hb_005288_100 Hb_005288_100 Hb_036790_110--Hb_005288_100 Hb_036790_110--Hb_005843_010 Hb_003008_020 Hb_003008_020 Hb_036790_110--Hb_003008_020 Hb_005914_160 Hb_005914_160 Hb_000708_020--Hb_005914_160 Hb_000389_170 Hb_000389_170 Hb_000708_020--Hb_000389_170 Hb_001699_110 Hb_001699_110 Hb_000708_020--Hb_001699_110 Hb_000708_020--Hb_000462_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.08875 5.48391 10.5763 0 0.0178079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 17.6413

CAGE analysis