Hb_005288_100

Information

Type -
Description -
Location Contig5288: 54682-58292
Sequence    

Annotation

kegg
ID pmum:103327470
description putative ribonuclease H protein At1g65750
nr
ID XP_008228034.1
description PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
swissprot
ID -
description -
trembl
ID Q2HX34
description LINE-type retrotransposon LIb DNA, complete sequence, Insertion at the SCL6 site OS=Ipomoea batatas PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005288_100 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
2 Hb_036790_110 0.0387521778 - - hypothetical protein JCGZ_22271 [Jatropha curcas]
3 Hb_005678_020 0.0860289739 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_008727_060 0.0887089179 - - Beta-glucosidase, putative [Ricinus communis]
5 Hb_009315_010 0.10025589 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
6 Hb_000389_170 0.101371729 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
7 Hb_005843_010 0.101925616 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
8 Hb_000708_020 0.1047352764 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_000462_010 0.1067478884 - - hypothetical protein VITISV_041696 [Vitis vinifera]
10 Hb_003008_020 0.1074854657 - - auxin-responsive family protein [Populus trichocarpa]
11 Hb_002400_260 0.1131423558 - - catalytic, putative [Ricinus communis]
12 Hb_002421_150 0.1207486608 - - hypothetical protein PRUPE_ppa020511mg [Prunus persica]
13 Hb_007666_010 0.1254593621 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
14 Hb_173387_010 0.1261552156 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
15 Hb_009004_010 0.1278390011 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
16 Hb_001699_110 0.1292670673 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
17 Hb_004837_120 0.1311021746 - - hypothetical protein JCGZ_25924 [Jatropha curcas]
18 Hb_002842_010 0.1315278338 - - sulfate transporter, putative [Ricinus communis]
19 Hb_066293_010 0.1318153456 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
20 Hb_000395_230 0.1344588121 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Vitis vinifera]

Gene co-expression network

sample Hb_005288_100 Hb_005288_100 Hb_036790_110 Hb_036790_110 Hb_005288_100--Hb_036790_110 Hb_005678_020 Hb_005678_020 Hb_005288_100--Hb_005678_020 Hb_008727_060 Hb_008727_060 Hb_005288_100--Hb_008727_060 Hb_009315_010 Hb_009315_010 Hb_005288_100--Hb_009315_010 Hb_000389_170 Hb_000389_170 Hb_005288_100--Hb_000389_170 Hb_005843_010 Hb_005843_010 Hb_005288_100--Hb_005843_010 Hb_036790_110--Hb_005678_020 Hb_036790_110--Hb_009315_010 Hb_000462_010 Hb_000462_010 Hb_036790_110--Hb_000462_010 Hb_036790_110--Hb_005843_010 Hb_003008_020 Hb_003008_020 Hb_036790_110--Hb_003008_020 Hb_005678_020--Hb_000462_010 Hb_005678_020--Hb_005843_010 Hb_005678_020--Hb_009315_010 Hb_005010_030 Hb_005010_030 Hb_005678_020--Hb_005010_030 Hb_000708_020 Hb_000708_020 Hb_005678_020--Hb_000708_020 Hb_008727_060--Hb_000389_170 Hb_008727_060--Hb_009315_010 Hb_008727_060--Hb_036790_110 Hb_008727_060--Hb_005843_010 Hb_001699_110 Hb_001699_110 Hb_008727_060--Hb_001699_110 Hb_001711_140 Hb_001711_140 Hb_009315_010--Hb_001711_140 Hb_009315_010--Hb_000462_010 Hb_009315_010--Hb_005843_010 Hb_009315_010--Hb_005010_030 Hb_000389_170--Hb_001699_110 Hb_020367_040 Hb_020367_040 Hb_000389_170--Hb_020367_040 Hb_000389_170--Hb_000708_020 Hb_002421_150 Hb_002421_150 Hb_000389_170--Hb_002421_150 Hb_005843_010--Hb_000462_010 Hb_005843_010--Hb_005010_030 Hb_005843_010--Hb_000708_020 Hb_005066_040 Hb_005066_040 Hb_005843_010--Hb_005066_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0192605 0.0173056 0.0384741 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0849229

CAGE analysis