Hb_005066_040

Information

Type -
Description -
Location Contig5066: 38395-39936
Sequence    

Annotation

kegg
ID rcu:RCOM_1335110
description Reticuline oxidase precursor, putative (EC:1.21.3.3)
nr
ID XP_002523152.1
description Reticuline oxidase precursor, putative [Ricinus communis]
swissprot
ID Q9SVG4
description Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2
trembl
ID B9SAZ2
description Reticuline oxidase, putative OS=Ricinus communis GN=RCOM_1335110 PE=4 SV=1
Gene Ontology
ID GO:0008762
description reticuline oxidase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005066_040 0.0 - - Reticuline oxidase precursor, putative [Ricinus communis]
2 Hb_005843_010 0.0792004437 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
3 Hb_009315_010 0.0827577351 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
4 Hb_022092_070 0.0851301765 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5 [Jatropha curcas]
5 Hb_002119_150 0.085552682 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
6 Hb_008518_060 0.0917584515 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
7 Hb_000739_280 0.0920555487 - - alcohol dehydrogenase, putative [Ricinus communis]
8 Hb_000260_520 0.0940872491 - - receptor protein kinase, putative [Ricinus communis]
9 Hb_001711_140 0.0944449844 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
10 Hb_001657_020 0.0970447325 - - heat shock family protein [Populus trichocarpa]
11 Hb_001433_090 0.1001298492 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
12 Hb_005062_100 0.1009863878 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
13 Hb_000002_110 0.102490915 - - hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]
14 Hb_005000_150 0.1063263217 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000139_060 0.1063686565 - - Photosystem I reaction center subunit II, chloroplast precursor, putative [Ricinus communis]
16 Hb_001541_200 0.1067953688 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
17 Hb_026549_060 0.107001076 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
18 Hb_001500_130 0.1071902986 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
19 Hb_029587_010 0.1082152395 - - G-type lectin S-receptor-like serine/threonine-protein kinase [Glycine soja]
20 Hb_001397_020 0.1085498724 - - cytochrome P450 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_005066_040 Hb_005066_040 Hb_005843_010 Hb_005843_010 Hb_005066_040--Hb_005843_010 Hb_009315_010 Hb_009315_010 Hb_005066_040--Hb_009315_010 Hb_022092_070 Hb_022092_070 Hb_005066_040--Hb_022092_070 Hb_002119_150 Hb_002119_150 Hb_005066_040--Hb_002119_150 Hb_008518_060 Hb_008518_060 Hb_005066_040--Hb_008518_060 Hb_000739_280 Hb_000739_280 Hb_005066_040--Hb_000739_280 Hb_005678_020 Hb_005678_020 Hb_005843_010--Hb_005678_020 Hb_000462_010 Hb_000462_010 Hb_005843_010--Hb_000462_010 Hb_005843_010--Hb_009315_010 Hb_005010_030 Hb_005010_030 Hb_005843_010--Hb_005010_030 Hb_000708_020 Hb_000708_020 Hb_005843_010--Hb_000708_020 Hb_001711_140 Hb_001711_140 Hb_009315_010--Hb_001711_140 Hb_009315_010--Hb_000462_010 Hb_009315_010--Hb_005678_020 Hb_036790_110 Hb_036790_110 Hb_009315_010--Hb_036790_110 Hb_009315_010--Hb_005010_030 Hb_022092_070--Hb_008518_060 Hb_000260_520 Hb_000260_520 Hb_022092_070--Hb_000260_520 Hb_001186_040 Hb_001186_040 Hb_022092_070--Hb_001186_040 Hb_005000_150 Hb_005000_150 Hb_022092_070--Hb_005000_150 Hb_008695_060 Hb_008695_060 Hb_022092_070--Hb_008695_060 Hb_004837_080 Hb_004837_080 Hb_002119_150--Hb_004837_080 Hb_000254_080 Hb_000254_080 Hb_002119_150--Hb_000254_080 Hb_001269_540 Hb_001269_540 Hb_002119_150--Hb_001269_540 Hb_000538_110 Hb_000538_110 Hb_002119_150--Hb_000538_110 Hb_002119_150--Hb_000260_520 Hb_080797_010 Hb_080797_010 Hb_002119_150--Hb_080797_010 Hb_000029_210 Hb_000029_210 Hb_008518_060--Hb_000029_210 Hb_001053_120 Hb_001053_120 Hb_008518_060--Hb_001053_120 Hb_001163_010 Hb_001163_010 Hb_008518_060--Hb_001163_010 Hb_005062_100 Hb_005062_100 Hb_008518_060--Hb_005062_100 Hb_001397_020 Hb_001397_020 Hb_008518_060--Hb_001397_020 Hb_002170_030 Hb_002170_030 Hb_008518_060--Hb_002170_030 Hb_000739_280--Hb_005062_100 Hb_001488_160 Hb_001488_160 Hb_000739_280--Hb_001488_160 Hb_000002_110 Hb_000002_110 Hb_000739_280--Hb_000002_110 Hb_001699_110 Hb_001699_110 Hb_000739_280--Hb_001699_110 Hb_000739_280--Hb_000260_520
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.11369 2.34138 7.81706 0.0124399 0.0465836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0907613 0.0238018 0 0.094972 12.6622

CAGE analysis