Hb_001186_040

Information

Type -
Description -
Location Contig1186: 43324-44543
Sequence    

Annotation

kegg
ID rcu:RCOM_0755920
description Peroxidase 3 precursor, putative (EC:1.11.1.7)
nr
ID XP_002521298.1
description Peroxidase 3 precursor, putative [Ricinus communis]
swissprot
ID A7QEU4
description Peroxidase 5 OS=Vitis vinifera GN=GSVIVT00037159001 PE=1 SV=2
trembl
ID B9S5M9
description Peroxidase OS=Ricinus communis GN=RCOM_0755920 PE=3 SV=1
Gene Ontology
ID GO:0005576
description peroxidase 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05508: 43501-44686
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001186_040 0.0 - - Peroxidase 3 precursor, putative [Ricinus communis]
2 Hb_140595_020 0.0599183733 - - PREDICTED: vegetative cell wall protein gp1-like [Solanum lycopersicum]
3 Hb_140595_030 0.0816165235 - - -
4 Hb_000230_490 0.0913912348 - - conserved hypothetical protein [Ricinus communis]
5 Hb_022092_070 0.0954209539 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5 [Jatropha curcas]
6 Hb_000260_520 0.0957477401 - - receptor protein kinase, putative [Ricinus communis]
7 Hb_008727_060 0.1025635244 - - Beta-glucosidase, putative [Ricinus communis]
8 Hb_001269_540 0.1094906579 - - hypothetical protein VITISV_038016 [Vitis vinifera]
9 Hb_028818_020 0.1164870137 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
10 Hb_008695_060 0.1174666951 - - unknown [Populus trichocarpa x Populus deltoides]
11 Hb_001366_360 0.1204034289 - - catalytic, putative [Ricinus communis]
12 Hb_005066_040 0.1220225241 - - Reticuline oxidase precursor, putative [Ricinus communis]
13 Hb_000155_230 0.1239311949 - - rac gtpase, putative [Ricinus communis]
14 Hb_001123_300 0.124741597 - - hypothetical protein POPTR_0003s16270g [Populus trichocarpa]
15 Hb_000020_180 0.1255876949 - - laccase, putative [Ricinus communis]
16 Hb_007718_040 0.1267392852 - - hypothetical protein PRUPE_ppb025054mg [Prunus persica]
17 Hb_001105_150 0.1270199156 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
18 Hb_002119_150 0.1282296649 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
19 Hb_009315_010 0.1289466963 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
20 Hb_036790_110 0.1309125034 - - hypothetical protein JCGZ_22271 [Jatropha curcas]

Gene co-expression network

sample Hb_001186_040 Hb_001186_040 Hb_140595_020 Hb_140595_020 Hb_001186_040--Hb_140595_020 Hb_140595_030 Hb_140595_030 Hb_001186_040--Hb_140595_030 Hb_000230_490 Hb_000230_490 Hb_001186_040--Hb_000230_490 Hb_022092_070 Hb_022092_070 Hb_001186_040--Hb_022092_070 Hb_000260_520 Hb_000260_520 Hb_001186_040--Hb_000260_520 Hb_008727_060 Hb_008727_060 Hb_001186_040--Hb_008727_060 Hb_140595_020--Hb_140595_030 Hb_140595_020--Hb_000260_520 Hb_001104_070 Hb_001104_070 Hb_140595_020--Hb_001104_070 Hb_000155_230 Hb_000155_230 Hb_140595_020--Hb_000155_230 Hb_001105_150 Hb_001105_150 Hb_140595_020--Hb_001105_150 Hb_140595_030--Hb_000155_230 Hb_140595_030--Hb_001105_150 Hb_140595_030--Hb_001104_070 Hb_000920_340 Hb_000920_340 Hb_140595_030--Hb_000920_340 Hb_140595_030--Hb_000260_520 Hb_001269_540 Hb_001269_540 Hb_000230_490--Hb_001269_540 Hb_080797_010 Hb_080797_010 Hb_000230_490--Hb_080797_010 Hb_004837_080 Hb_004837_080 Hb_000230_490--Hb_004837_080 Hb_000230_490--Hb_140595_020 Hb_002119_150 Hb_002119_150 Hb_000230_490--Hb_002119_150 Hb_008518_060 Hb_008518_060 Hb_022092_070--Hb_008518_060 Hb_005066_040 Hb_005066_040 Hb_022092_070--Hb_005066_040 Hb_022092_070--Hb_000260_520 Hb_005000_150 Hb_005000_150 Hb_022092_070--Hb_005000_150 Hb_008695_060 Hb_008695_060 Hb_022092_070--Hb_008695_060 Hb_000260_520--Hb_001104_070 Hb_005062_100 Hb_005062_100 Hb_000260_520--Hb_005062_100 Hb_018487_040 Hb_018487_040 Hb_000260_520--Hb_018487_040 Hb_000260_520--Hb_002119_150 Hb_000389_170 Hb_000389_170 Hb_008727_060--Hb_000389_170 Hb_009315_010 Hb_009315_010 Hb_008727_060--Hb_009315_010 Hb_005288_100 Hb_005288_100 Hb_008727_060--Hb_005288_100 Hb_036790_110 Hb_036790_110 Hb_008727_060--Hb_036790_110 Hb_005843_010 Hb_005843_010 Hb_008727_060--Hb_005843_010 Hb_001699_110 Hb_001699_110 Hb_008727_060--Hb_001699_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.897309 0.53754 3.58503 0.0344721 0.0304127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.025308 7.27689

CAGE analysis