Hb_000230_490

Information

Type -
Description -
Location Contig230: 463714-473696
Sequence    

Annotation

kegg
ID rcu:RCOM_0678130
description hypothetical protein
nr
ID XP_002516789.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LUG9
description Mediator of RNA polymerase II transcription subunit 33A OS=Arabidopsis thaliana GN=MED33A PE=1 SV=1
trembl
ID B9RSS0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0678130 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 33a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24067: 463817-464348 , PASA_asmbl_24068: 465966-466088 , PASA_asmbl_24069: 466672-467200 , PASA_asmbl_24070: 467733-468792 , PASA_asmbl_24071: 468965-469441 , PASA_asmbl_24072: 469982-471688 , PASA_asmbl_24073: 471729-473431
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_490 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001269_540 0.0616944103 - - hypothetical protein VITISV_038016 [Vitis vinifera]
3 Hb_080797_010 0.0820658543 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
4 Hb_004837_080 0.0847037346 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
5 Hb_001186_040 0.0913912348 - - Peroxidase 3 precursor, putative [Ricinus communis]
6 Hb_140595_020 0.092560425 - - PREDICTED: vegetative cell wall protein gp1-like [Solanum lycopersicum]
7 Hb_002119_150 0.095251103 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
8 Hb_000254_080 0.0959414558 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
9 Hb_000920_100 0.0980684776 - - o-methyltransferase, putative [Ricinus communis]
10 Hb_005066_040 0.1094304165 - - Reticuline oxidase precursor, putative [Ricinus communis]
11 Hb_001097_140 0.1094858985 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000260_520 0.1114593238 - - receptor protein kinase, putative [Ricinus communis]
13 Hb_000176_050 0.1115475142 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
14 Hb_000347_320 0.1122992665 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
15 Hb_008001_030 0.114862211 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
16 Hb_000020_180 0.1149437808 - - laccase, putative [Ricinus communis]
17 Hb_008727_060 0.1151176323 - - Beta-glucosidase, putative [Ricinus communis]
18 Hb_022092_070 0.1161585143 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5 [Jatropha curcas]
19 Hb_000271_130 0.1184769258 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
20 Hb_005018_030 0.1188934057 - - hypothetical protein CICLE_v10019811mg [Citrus clementina]

Gene co-expression network

sample Hb_000230_490 Hb_000230_490 Hb_001269_540 Hb_001269_540 Hb_000230_490--Hb_001269_540 Hb_080797_010 Hb_080797_010 Hb_000230_490--Hb_080797_010 Hb_004837_080 Hb_004837_080 Hb_000230_490--Hb_004837_080 Hb_001186_040 Hb_001186_040 Hb_000230_490--Hb_001186_040 Hb_140595_020 Hb_140595_020 Hb_000230_490--Hb_140595_020 Hb_002119_150 Hb_002119_150 Hb_000230_490--Hb_002119_150 Hb_001269_540--Hb_080797_010 Hb_001269_540--Hb_004837_080 Hb_001269_540--Hb_002119_150 Hb_000254_080 Hb_000254_080 Hb_001269_540--Hb_000254_080 Hb_001269_540--Hb_140595_020 Hb_080797_010--Hb_004837_080 Hb_001097_140 Hb_001097_140 Hb_080797_010--Hb_001097_140 Hb_000122_230 Hb_000122_230 Hb_080797_010--Hb_000122_230 Hb_080797_010--Hb_002119_150 Hb_004837_080--Hb_000254_080 Hb_004837_080--Hb_002119_150 Hb_007620_020 Hb_007620_020 Hb_004837_080--Hb_007620_020 Hb_004837_080--Hb_000122_230 Hb_001186_040--Hb_140595_020 Hb_140595_030 Hb_140595_030 Hb_001186_040--Hb_140595_030 Hb_022092_070 Hb_022092_070 Hb_001186_040--Hb_022092_070 Hb_000260_520 Hb_000260_520 Hb_001186_040--Hb_000260_520 Hb_008727_060 Hb_008727_060 Hb_001186_040--Hb_008727_060 Hb_140595_020--Hb_140595_030 Hb_140595_020--Hb_000260_520 Hb_001104_070 Hb_001104_070 Hb_140595_020--Hb_001104_070 Hb_000155_230 Hb_000155_230 Hb_140595_020--Hb_000155_230 Hb_001105_150 Hb_001105_150 Hb_140595_020--Hb_001105_150 Hb_002119_150--Hb_000254_080 Hb_000538_110 Hb_000538_110 Hb_002119_150--Hb_000538_110 Hb_002119_150--Hb_000260_520
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0775148 5.08402 3.72713 20.5292 0.085565 0.0472302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0277998 0.072927 0.0420907 1.04788 35.4634

CAGE analysis