Hb_002193_080

Information

Type -
Description -
Location Contig2193: 75059-77440
Sequence    

Annotation

kegg
ID rcu:RCOM_0404520
description synaptotagmin, putative
nr
ID XP_012087734.1
description PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
swissprot
ID B8XCH5
description Protein QUIRKY OS=Arabidopsis thaliana GN=QKY PE=2 SV=1
trembl
ID A0A067JP29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25509 PE=4 SV=1
Gene Ontology
ID GO:0005515
description multiple c2 and transmembrane domain-containing protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22579: 74706-75573
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002193_080 0.0 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
2 Hb_008689_010 0.059149201 - - hypothetical protein POPTR_0006s25330g [Populus trichocarpa]
3 Hb_005211_210 0.069429734 - - lysine and histidine specific transporter family protein [Populus trichocarpa]
4 Hb_003050_330 0.086040224 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
5 Hb_003008_020 0.0918375926 - - auxin-responsive family protein [Populus trichocarpa]
6 Hb_000201_010 0.1006657134 - - unnamed protein product [Vitis vinifera]
7 Hb_005675_070 0.1052888305 - - hypothetical protein EUGRSUZ_K01585 [Eucalyptus grandis]
8 Hb_000395_230 0.1101161381 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Vitis vinifera]
9 Hb_000434_060 0.1101823534 desease resistance Gene Name: hmm Disease resistance protein RPM1, putative [Ricinus communis]
10 Hb_002043_070 0.1112707115 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
11 Hb_003494_150 0.1119308823 - - Silicon transporter, putative [Ricinus communis]
12 Hb_001902_040 0.1140025043 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009522_020 0.1142946838 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
14 Hb_001242_040 0.1150057964 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
15 Hb_132840_170 0.1171210198 transcription factor TF Family: NAC Transcription factor [Theobroma cacao]
16 Hb_010222_060 0.1174217129 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000271_130 0.1193500122 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
18 Hb_001289_010 0.1217524221 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
19 Hb_015934_090 0.1226852141 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]
20 Hb_013394_120 0.1227826251 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]

Gene co-expression network

sample Hb_002193_080 Hb_002193_080 Hb_008689_010 Hb_008689_010 Hb_002193_080--Hb_008689_010 Hb_005211_210 Hb_005211_210 Hb_002193_080--Hb_005211_210 Hb_003050_330 Hb_003050_330 Hb_002193_080--Hb_003050_330 Hb_003008_020 Hb_003008_020 Hb_002193_080--Hb_003008_020 Hb_000201_010 Hb_000201_010 Hb_002193_080--Hb_000201_010 Hb_005675_070 Hb_005675_070 Hb_002193_080--Hb_005675_070 Hb_008689_010--Hb_005211_210 Hb_008689_010--Hb_003008_020 Hb_008689_010--Hb_003050_330 Hb_008689_010--Hb_005675_070 Hb_001902_040 Hb_001902_040 Hb_008689_010--Hb_001902_040 Hb_002043_070 Hb_002043_070 Hb_005211_210--Hb_002043_070 Hb_005211_210--Hb_000201_010 Hb_005211_210--Hb_005675_070 Hb_000434_060 Hb_000434_060 Hb_005211_210--Hb_000434_060 Hb_003494_150 Hb_003494_150 Hb_003050_330--Hb_003494_150 Hb_003050_330--Hb_003008_020 Hb_032202_010 Hb_032202_010 Hb_003050_330--Hb_032202_010 Hb_007666_010 Hb_007666_010 Hb_003050_330--Hb_007666_010 Hb_036790_110 Hb_036790_110 Hb_003008_020--Hb_036790_110 Hb_077774_010 Hb_077774_010 Hb_003008_020--Hb_077774_010 Hb_000752_040 Hb_000752_040 Hb_003008_020--Hb_000752_040 Hb_000201_010--Hb_008689_010 Hb_000258_230 Hb_000258_230 Hb_000201_010--Hb_000258_230 Hb_000201_010--Hb_002043_070 Hb_000201_010--Hb_003050_330 Hb_158189_010 Hb_158189_010 Hb_005675_070--Hb_158189_010 Hb_001541_210 Hb_001541_210 Hb_005675_070--Hb_001541_210 Hb_003893_130 Hb_003893_130 Hb_005675_070--Hb_003893_130 Hb_005675_070--Hb_077774_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.18244 2.86188 6.15118 0.0542808 0.0585281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0873171 6.84486

CAGE analysis