Hb_007666_010

Information

Type -
Description -
Location Contig7666: 2308-3374
Sequence    

Annotation

kegg
ID rcu:RCOM_0902780
description hypothetical protein
nr
ID XP_012091256.1
description PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JA80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21147 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57411: 2660-3151 , PASA_asmbl_57412: 3249-3467
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007666_010 0.0 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
2 Hb_003494_150 0.0891786142 - - Silicon transporter, putative [Ricinus communis]
3 Hb_003050_330 0.0931137886 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
4 Hb_032202_010 0.1037506308 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
5 Hb_000752_040 0.1058299651 - - PREDICTED: uncharacterized protein LOC104884990 [Beta vulgaris subsp. vulgaris]
6 Hb_000347_320 0.1117026797 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
7 Hb_000369_040 0.1118608275 - - Ankyrin repeat family protein, putative [Theobroma cacao]
8 Hb_002785_010 0.1144860093 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
9 Hb_003008_020 0.1210505117 - - auxin-responsive family protein [Populus trichocarpa]
10 Hb_001158_250 0.1215983951 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005288_100 0.1254593621 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
12 Hb_000120_480 0.1270256815 - - -
13 Hb_000061_440 0.1300889631 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
14 Hb_036790_110 0.130720861 - - hypothetical protein JCGZ_22271 [Jatropha curcas]
15 Hb_008689_010 0.1368235207 - - hypothetical protein POPTR_0006s25330g [Populus trichocarpa]
16 Hb_005018_030 0.140781269 - - hypothetical protein CICLE_v10019811mg [Citrus clementina]
17 Hb_000271_130 0.1408719141 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
18 Hb_005790_010 0.1426660481 - - hypothetical protein POPTR_0004s24080g [Populus trichocarpa]
19 Hb_005183_030 0.1444759822 - - PREDICTED: probable calcium-binding protein CML16 [Jatropha curcas]
20 Hb_003226_230 0.1447811644 - - PREDICTED: transposon Ty3-G Gag-Pol polyprotein [Phoenix dactylifera]

Gene co-expression network

sample Hb_007666_010 Hb_007666_010 Hb_003494_150 Hb_003494_150 Hb_007666_010--Hb_003494_150 Hb_003050_330 Hb_003050_330 Hb_007666_010--Hb_003050_330 Hb_032202_010 Hb_032202_010 Hb_007666_010--Hb_032202_010 Hb_000752_040 Hb_000752_040 Hb_007666_010--Hb_000752_040 Hb_000347_320 Hb_000347_320 Hb_007666_010--Hb_000347_320 Hb_000369_040 Hb_000369_040 Hb_007666_010--Hb_000369_040 Hb_003494_150--Hb_003050_330 Hb_003494_150--Hb_032202_010 Hb_002193_080 Hb_002193_080 Hb_003494_150--Hb_002193_080 Hb_003008_020 Hb_003008_020 Hb_003494_150--Hb_003008_020 Hb_008689_010 Hb_008689_010 Hb_003494_150--Hb_008689_010 Hb_003050_330--Hb_003008_020 Hb_003050_330--Hb_032202_010 Hb_003050_330--Hb_008689_010 Hb_003050_330--Hb_002193_080 Hb_032202_010--Hb_000752_040 Hb_002785_010 Hb_002785_010 Hb_032202_010--Hb_002785_010 Hb_032202_010--Hb_000369_040 Hb_000752_040--Hb_003008_020 Hb_000752_040--Hb_003050_330 Hb_000752_040--Hb_002785_010 Hb_005018_030 Hb_005018_030 Hb_000752_040--Hb_005018_030 Hb_000271_130 Hb_000271_130 Hb_000347_320--Hb_000271_130 Hb_000120_480 Hb_000120_480 Hb_000347_320--Hb_000120_480 Hb_000230_490 Hb_000230_490 Hb_000347_320--Hb_000230_490 Hb_066293_010 Hb_066293_010 Hb_000347_320--Hb_066293_010 Hb_000920_100 Hb_000920_100 Hb_000347_320--Hb_000920_100 Hb_000369_040--Hb_002785_010 Hb_000369_040--Hb_003050_330 Hb_005051_010 Hb_005051_010 Hb_000369_040--Hb_005051_010 Hb_001242_040 Hb_001242_040 Hb_000369_040--Hb_001242_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0310752 1.96409 0.863754 2.55455 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0569139 0 0 0.054128 4.72782

CAGE analysis