Hb_000347_320

Information

Type -
Description -
Location Contig347: 339435-341762
Sequence    

Annotation

kegg
ID pop:POPTR_0003s06530g
description POPTRDRAFT_645825; hypothetical protein
nr
ID XP_012068868.1
description PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
swissprot
ID O65351
description Subtilisin-like protease SBT1.7 OS=Arabidopsis thaliana GN=SBT1.7 PE=1 SV=1
trembl
ID A0A067KWV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24685 PE=3 SV=1
Gene Ontology
ID GO:0005774
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36227: 339670-342147
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_320 0.0 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
2 Hb_000271_130 0.111387884 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
3 Hb_007666_010 0.1117026797 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
4 Hb_000120_480 0.1119579312 - - -
5 Hb_000230_490 0.1122992665 - - conserved hypothetical protein [Ricinus communis]
6 Hb_066293_010 0.1156034989 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
7 Hb_000920_100 0.1175878558 - - o-methyltransferase, putative [Ricinus communis]
8 Hb_002713_060 0.118197993 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
9 Hb_005183_030 0.1193391492 - - PREDICTED: probable calcium-binding protein CML16 [Jatropha curcas]
10 Hb_004934_130 0.1201451401 - - 12-oxophytodienoate reductase 2 isoform 1 [Theobroma cacao]
11 Hb_005057_030 0.1210982816 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
12 Hb_001232_040 0.124771631 - - PREDICTED: uncharacterized protein LOC105634974 [Jatropha curcas]
13 Hb_001158_250 0.1252008958 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003494_150 0.1252350981 - - Silicon transporter, putative [Ricinus communis]
15 Hb_000395_230 0.1267981849 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Vitis vinifera]
16 Hb_003226_230 0.1268029542 - - PREDICTED: transposon Ty3-G Gag-Pol polyprotein [Phoenix dactylifera]
17 Hb_003097_220 0.1279015332 - - hypothetical protein POPTR_0001s06150g [Populus trichocarpa]
18 Hb_125961_010 0.1312469972 - - ATP binding protein, putative [Ricinus communis]
19 Hb_005018_030 0.1320990971 - - hypothetical protein CICLE_v10019811mg [Citrus clementina]
20 Hb_005867_050 0.1324000316 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000347_320 Hb_000347_320 Hb_000271_130 Hb_000271_130 Hb_000347_320--Hb_000271_130 Hb_007666_010 Hb_007666_010 Hb_000347_320--Hb_007666_010 Hb_000120_480 Hb_000120_480 Hb_000347_320--Hb_000120_480 Hb_000230_490 Hb_000230_490 Hb_000347_320--Hb_000230_490 Hb_066293_010 Hb_066293_010 Hb_000347_320--Hb_066293_010 Hb_000920_100 Hb_000920_100 Hb_000347_320--Hb_000920_100 Hb_000395_230 Hb_000395_230 Hb_000271_130--Hb_000395_230 Hb_000271_130--Hb_000120_480 Hb_005183_100 Hb_005183_100 Hb_000271_130--Hb_005183_100 Hb_001158_250 Hb_001158_250 Hb_000271_130--Hb_001158_250 Hb_005723_090 Hb_005723_090 Hb_000271_130--Hb_005723_090 Hb_009522_020 Hb_009522_020 Hb_000271_130--Hb_009522_020 Hb_003494_150 Hb_003494_150 Hb_007666_010--Hb_003494_150 Hb_003050_330 Hb_003050_330 Hb_007666_010--Hb_003050_330 Hb_032202_010 Hb_032202_010 Hb_007666_010--Hb_032202_010 Hb_000752_040 Hb_000752_040 Hb_007666_010--Hb_000752_040 Hb_000369_040 Hb_000369_040 Hb_007666_010--Hb_000369_040 Hb_003226_230 Hb_003226_230 Hb_000120_480--Hb_003226_230 Hb_000120_480--Hb_005723_090 Hb_162676_010 Hb_162676_010 Hb_000120_480--Hb_162676_010 Hb_125961_010 Hb_125961_010 Hb_000120_480--Hb_125961_010 Hb_000120_480--Hb_001158_250 Hb_005057_030 Hb_005057_030 Hb_000120_480--Hb_005057_030 Hb_001269_540 Hb_001269_540 Hb_000230_490--Hb_001269_540 Hb_080797_010 Hb_080797_010 Hb_000230_490--Hb_080797_010 Hb_004837_080 Hb_004837_080 Hb_000230_490--Hb_004837_080 Hb_001186_040 Hb_001186_040 Hb_000230_490--Hb_001186_040 Hb_140595_020 Hb_140595_020 Hb_000230_490--Hb_140595_020 Hb_002119_150 Hb_002119_150 Hb_000230_490--Hb_002119_150 Hb_066293_010--Hb_125961_010 Hb_066293_010--Hb_003226_230 Hb_169948_010 Hb_169948_010 Hb_066293_010--Hb_169948_010 Hb_066293_010--Hb_000120_480 Hb_066293_010--Hb_162676_010 Hb_057880_020 Hb_057880_020 Hb_066293_010--Hb_057880_020 Hb_000920_100--Hb_004837_080 Hb_000254_080 Hb_000254_080 Hb_000920_100--Hb_000254_080 Hb_000920_100--Hb_000230_490 Hb_004934_130 Hb_004934_130 Hb_000920_100--Hb_004934_130 Hb_089124_010 Hb_089124_010 Hb_000920_100--Hb_089124_010 Hb_001097_140 Hb_001097_140 Hb_000920_100--Hb_001097_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.234725 17.4355 10.068 32.5097 0.274764 0.401794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.439174 0.225374 0.400386 2.53115 63.161

CAGE analysis