Hb_000920_100

Information

Type -
Description -
Location Contig920: 57382-60759
Sequence    

Annotation

kegg
ID rcu:RCOM_1453200
description o-methyltransferase, putative (EC:2.1.1.68)
nr
ID XP_002513089.1
description o-methyltransferase, putative [Ricinus communis]
swissprot
ID Q43046
description Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1
trembl
ID B9RGD7
description O-methyltransferase, putative OS=Ricinus communis GN=RCOM_1453200 PE=4 SV=1
Gene Ontology
ID GO:0046983
description caffeic acid 3-o-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62385: 57464-59481 , PASA_asmbl_62386: 58577-59065
cDNA
(Sanger)
(ID:Location)		 017_M18.ab1: 57540-58909

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_100 0.0 - - o-methyltransferase, putative [Ricinus communis]
2 Hb_004837_080 0.0848829406 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
3 Hb_000254_080 0.0938390429 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
4 Hb_000230_490 0.0980684776 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004934_130 0.1050700527 - - 12-oxophytodienoate reductase 2 isoform 1 [Theobroma cacao]
6 Hb_089124_010 0.1082156226 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
7 Hb_001097_140 0.1092979259 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001269_540 0.1106671698 - - hypothetical protein VITISV_038016 [Vitis vinifera]
9 Hb_007620_020 0.1132064162 - - PREDICTED: cationic amino acid transporter 7, chloroplastic-like isoform X1 [Jatropha curcas]
10 Hb_080797_010 0.1146798555 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
11 Hb_000347_320 0.1175878558 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
12 Hb_000122_230 0.1186472588 - - laccase, putative [Ricinus communis]
13 Hb_000176_050 0.120067942 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
14 Hb_000134_080 0.122221552 - - synaptotagmin, putative [Ricinus communis]
15 Hb_000139_060 0.1229477236 - - Photosystem I reaction center subunit II, chloroplast precursor, putative [Ricinus communis]
16 Hb_002119_150 0.1236139787 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
17 Hb_000608_190 0.124570089 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]
18 Hb_002119_110 0.1259992763 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
19 Hb_005057_030 0.1280860981 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
20 Hb_189208_040 0.1291000181 - - hypothetical protein POPTR_0002s18920g [Populus trichocarpa]

Gene co-expression network

sample Hb_000920_100 Hb_000920_100 Hb_004837_080 Hb_004837_080 Hb_000920_100--Hb_004837_080 Hb_000254_080 Hb_000254_080 Hb_000920_100--Hb_000254_080 Hb_000230_490 Hb_000230_490 Hb_000920_100--Hb_000230_490 Hb_004934_130 Hb_004934_130 Hb_000920_100--Hb_004934_130 Hb_089124_010 Hb_089124_010 Hb_000920_100--Hb_089124_010 Hb_001097_140 Hb_001097_140 Hb_000920_100--Hb_001097_140 Hb_004837_080--Hb_000254_080 Hb_002119_150 Hb_002119_150 Hb_004837_080--Hb_002119_150 Hb_001269_540 Hb_001269_540 Hb_004837_080--Hb_001269_540 Hb_080797_010 Hb_080797_010 Hb_004837_080--Hb_080797_010 Hb_007620_020 Hb_007620_020 Hb_004837_080--Hb_007620_020 Hb_000122_230 Hb_000122_230 Hb_004837_080--Hb_000122_230 Hb_000254_080--Hb_002119_150 Hb_000254_080--Hb_000122_230 Hb_000254_080--Hb_001269_540 Hb_000254_080--Hb_080797_010 Hb_000997_370 Hb_000997_370 Hb_000254_080--Hb_000997_370 Hb_000230_490--Hb_001269_540 Hb_000230_490--Hb_080797_010 Hb_000230_490--Hb_004837_080 Hb_001186_040 Hb_001186_040 Hb_000230_490--Hb_001186_040 Hb_140595_020 Hb_140595_020 Hb_000230_490--Hb_140595_020 Hb_000230_490--Hb_002119_150 Hb_002814_010 Hb_002814_010 Hb_004934_130--Hb_002814_010 Hb_002713_060 Hb_002713_060 Hb_004934_130--Hb_002713_060 Hb_066293_010 Hb_066293_010 Hb_004934_130--Hb_066293_010 Hb_002226_090 Hb_002226_090 Hb_004934_130--Hb_002226_090 Hb_001541_280 Hb_001541_280 Hb_004934_130--Hb_001541_280 Hb_089124_010--Hb_007620_020 Hb_000608_190 Hb_000608_190 Hb_089124_010--Hb_000608_190 Hb_089124_010--Hb_004837_080 Hb_000670_070 Hb_000670_070 Hb_089124_010--Hb_000670_070 Hb_089124_010--Hb_080797_010 Hb_003358_030 Hb_003358_030 Hb_089124_010--Hb_003358_030 Hb_001097_140--Hb_080797_010 Hb_000207_240 Hb_000207_240 Hb_001097_140--Hb_000207_240 Hb_003714_030 Hb_003714_030 Hb_001097_140--Hb_003714_030 Hb_001097_140--Hb_001269_540 Hb_186765_010 Hb_186765_010 Hb_001097_140--Hb_186765_010 Hb_001097_140--Hb_004837_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.357804 9.10031 10.1841 38.1811 0.584859 0.640811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.244799 0.299603 0.282661 6.0897 71.9252

CAGE analysis