Hb_000200_360

Information

Type -
Description -
Location Contig200: 381726-383302
Sequence    

Annotation

kegg
ID rcu:RCOM_1311450
description hypothetical protein
nr
ID XP_012075775.1
description PREDICTED: reticulon-like protein B14 [Jatropha curcas]
swissprot
ID Q9SUT9
description Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1
trembl
ID A0A067KFL9
description Reticulon-like protein OS=Jatropha curcas GN=JCGZ_09319 PE=4 SV=1
Gene Ontology
ID GO:0005789
description reticulon-like protein b9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20238: 381835-382884
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_360 0.0 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
2 Hb_001959_100 0.111515519 - - ammonium transporter, putative [Ricinus communis]
3 Hb_012633_060 0.1316882099 - - laccase, putative [Ricinus communis]
4 Hb_000227_100 0.1412272554 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
5 Hb_003261_010 0.1523838008 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
6 Hb_000684_400 0.1545215323 - - PREDICTED: uncharacterized protein LOC105642159 [Jatropha curcas]
7 Hb_000340_240 0.155773197 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000301_040 0.1578357608 - - PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]
9 Hb_002968_050 0.1579329774 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
10 Hb_000264_040 0.1647508427 - - sugar transporter, putative [Ricinus communis]
11 Hb_002759_050 0.1649407131 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
12 Hb_004586_270 0.1678148377 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2 isoform X2 [Jatropha curcas]
13 Hb_000417_220 0.1693427804 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Cucumis melo]
14 Hb_001832_170 0.1715495745 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
15 Hb_012760_120 0.1736152155 - - PREDICTED: peroxidase 64-like [Jatropha curcas]
16 Hb_002886_010 0.176486201 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001213_110 0.1781916794 - - SOUL heme-binding family protein [Populus trichocarpa]
18 Hb_008112_020 0.1807791601 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
19 Hb_000445_120 0.182671684 - - ATP binding protein, putative [Ricinus communis]
20 Hb_000270_340 0.1849497465 - - hypothetical protein JCGZ_11546 [Jatropha curcas]

Gene co-expression network

sample Hb_000200_360 Hb_000200_360 Hb_001959_100 Hb_001959_100 Hb_000200_360--Hb_001959_100 Hb_012633_060 Hb_012633_060 Hb_000200_360--Hb_012633_060 Hb_000227_100 Hb_000227_100 Hb_000200_360--Hb_000227_100 Hb_003261_010 Hb_003261_010 Hb_000200_360--Hb_003261_010 Hb_000684_400 Hb_000684_400 Hb_000200_360--Hb_000684_400 Hb_000340_240 Hb_000340_240 Hb_000200_360--Hb_000340_240 Hb_001959_100--Hb_000340_240 Hb_012760_120 Hb_012760_120 Hb_001959_100--Hb_012760_120 Hb_000538_110 Hb_000538_110 Hb_001959_100--Hb_000538_110 Hb_001959_100--Hb_000227_100 Hb_011214_080 Hb_011214_080 Hb_001959_100--Hb_011214_080 Hb_012633_060--Hb_001959_100 Hb_000270_340 Hb_000270_340 Hb_012633_060--Hb_000270_340 Hb_012633_060--Hb_000227_100 Hb_012633_060--Hb_000340_240 Hb_012633_060--Hb_000538_110 Hb_000227_100--Hb_012760_120 Hb_008112_020 Hb_008112_020 Hb_000227_100--Hb_008112_020 Hb_004979_050 Hb_004979_050 Hb_000227_100--Hb_004979_050 Hb_003090_240 Hb_003090_240 Hb_000227_100--Hb_003090_240 Hb_000227_100--Hb_000684_400 Hb_003261_010--Hb_001959_100 Hb_003261_010--Hb_000340_240 Hb_000220_060 Hb_000220_060 Hb_003261_010--Hb_000220_060 Hb_000329_580 Hb_000329_580 Hb_003261_010--Hb_000329_580 Hb_002968_050 Hb_002968_050 Hb_003261_010--Hb_002968_050 Hb_001124_230 Hb_001124_230 Hb_000684_400--Hb_001124_230 Hb_169383_010 Hb_169383_010 Hb_000684_400--Hb_169383_010 Hb_006472_040 Hb_006472_040 Hb_000684_400--Hb_006472_040 Hb_000684_400--Hb_008112_020 Hb_000005_370 Hb_000005_370 Hb_000684_400--Hb_000005_370 Hb_000340_240--Hb_012760_120 Hb_000340_240--Hb_000220_060 Hb_000340_240--Hb_000538_110 Hb_010738_020 Hb_010738_020 Hb_000340_240--Hb_010738_020 Hb_000340_240--Hb_011214_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.305191 0.11561 1.53055 5.18936 0.112503 0.0257295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.686135 0.332078 0.381184 0.217184 9.74234

CAGE analysis