Hb_003261_010

Information

Type -
Description -
Location Contig3261: 4128-8074
Sequence    

Annotation

kegg
ID pop:POPTR_0067s00200g
description hypothetical protein
nr
ID XP_006388952.1
description hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
swissprot
ID C0LGG9
description Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=2 SV=2
trembl
ID U7E2M7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0067s00200g PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at1g53430

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34317: 6239-6823
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003261_010 0.0 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
2 Hb_001959_100 0.1401065789 - - ammonium transporter, putative [Ricinus communis]
3 Hb_000340_240 0.1415935772 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000200_360 0.1523838008 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
5 Hb_000220_060 0.1550557137 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 15 [Jatropha curcas]
6 Hb_000329_580 0.1569346344 - - malate dehydrogenase, putative [Ricinus communis]
7 Hb_002968_050 0.1576342754 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
8 Hb_001213_110 0.1603273998 - - SOUL heme-binding family protein [Populus trichocarpa]
9 Hb_002759_050 0.163361858 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
10 Hb_010738_020 0.1757595312 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
11 Hb_012633_060 0.1826224103 - - laccase, putative [Ricinus communis]
12 Hb_003377_010 0.1860632473 - - hypothetical protein POPTR_0016s06140g, partial [Populus trichocarpa]
13 Hb_000227_100 0.1864909848 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
14 Hb_002886_010 0.1867275014 - - conserved hypothetical protein [Ricinus communis]
15 Hb_019845_010 0.1889075745 - - protease inhibitor protein [Hevea brasiliensis]
16 Hb_000417_220 0.1938830586 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Cucumis melo]
17 Hb_011214_080 0.194409771 - - sucrose synthase 1 [Hevea brasiliensis]
18 Hb_000264_040 0.1944776074 - - sugar transporter, putative [Ricinus communis]
19 Hb_000445_120 0.1950268511 - - ATP binding protein, putative [Ricinus communis]
20 Hb_000684_400 0.2006482226 - - PREDICTED: uncharacterized protein LOC105642159 [Jatropha curcas]

Gene co-expression network

sample Hb_003261_010 Hb_003261_010 Hb_001959_100 Hb_001959_100 Hb_003261_010--Hb_001959_100 Hb_000340_240 Hb_000340_240 Hb_003261_010--Hb_000340_240 Hb_000200_360 Hb_000200_360 Hb_003261_010--Hb_000200_360 Hb_000220_060 Hb_000220_060 Hb_003261_010--Hb_000220_060 Hb_000329_580 Hb_000329_580 Hb_003261_010--Hb_000329_580 Hb_002968_050 Hb_002968_050 Hb_003261_010--Hb_002968_050 Hb_001959_100--Hb_000340_240 Hb_012760_120 Hb_012760_120 Hb_001959_100--Hb_012760_120 Hb_001959_100--Hb_000200_360 Hb_000538_110 Hb_000538_110 Hb_001959_100--Hb_000538_110 Hb_000227_100 Hb_000227_100 Hb_001959_100--Hb_000227_100 Hb_011214_080 Hb_011214_080 Hb_001959_100--Hb_011214_080 Hb_000340_240--Hb_012760_120 Hb_000340_240--Hb_000220_060 Hb_000340_240--Hb_000538_110 Hb_010738_020 Hb_010738_020 Hb_000340_240--Hb_010738_020 Hb_000340_240--Hb_011214_080 Hb_012633_060 Hb_012633_060 Hb_000200_360--Hb_012633_060 Hb_000200_360--Hb_000227_100 Hb_000684_400 Hb_000684_400 Hb_000200_360--Hb_000684_400 Hb_000200_360--Hb_000340_240 Hb_189208_080 Hb_189208_080 Hb_000220_060--Hb_189208_080 Hb_003038_070 Hb_003038_070 Hb_000220_060--Hb_003038_070 Hb_000220_060--Hb_011214_080 Hb_000220_060--Hb_010738_020 Hb_001105_150 Hb_001105_150 Hb_000220_060--Hb_001105_150 Hb_019613_010 Hb_019613_010 Hb_000329_580--Hb_019613_010 Hb_000329_580--Hb_002968_050 Hb_001213_110 Hb_001213_110 Hb_000329_580--Hb_001213_110 Hb_000329_580--Hb_000200_360 Hb_011053_020 Hb_011053_020 Hb_000329_580--Hb_011053_020 Hb_002968_050--Hb_000200_360 Hb_002968_050--Hb_001959_100 Hb_000510_280 Hb_000510_280 Hb_002968_050--Hb_000510_280 Hb_000264_040 Hb_000264_040 Hb_002968_050--Hb_000264_040 Hb_004586_270 Hb_004586_270 Hb_002968_050--Hb_004586_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0098921 0.00816449 0.106723 0.483924 0 0.0173135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0224811 0.0884439 0.0670933 0.00703714 1.08421

CAGE analysis