Hb_002968_050

Information

Type -
Description -
Location Contig2968: 77383-79104
Sequence    

Annotation

kegg
ID rcu:RCOM_0708260
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_002516181.1
description Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
swissprot
ID Q9M088
description Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1
trembl
ID B9RR12
description Glucan endo-1,3-beta-glucosidase, putative OS=Ricinus communis GN=RCOM_0708260 PE=3 SV=1
Gene Ontology
ID GO:0004553
description glucan endo- -beta-glucosidase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31040: 78128-78217
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002968_050 0.0 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
2 Hb_003261_010 0.1576342754 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
3 Hb_000200_360 0.1579329774 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
4 Hb_001959_100 0.1585217839 - - ammonium transporter, putative [Ricinus communis]
5 Hb_000510_280 0.16947989 transcription factor TF Family: AUX/IAA PREDICTED: auxin-induced protein 22D-like [Jatropha curcas]
6 Hb_000264_040 0.1706391941 - - sugar transporter, putative [Ricinus communis]
7 Hb_004586_270 0.1752546804 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2 isoform X2 [Jatropha curcas]
8 Hb_019613_010 0.1763744635 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_000329_580 0.1797346553 - - malate dehydrogenase, putative [Ricinus communis]
10 Hb_002759_050 0.1806028068 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
11 Hb_019845_010 0.1861558293 - - protease inhibitor protein [Hevea brasiliensis]
12 Hb_000445_120 0.1890435011 - - ATP binding protein, putative [Ricinus communis]
13 Hb_000005_140 0.1958506094 transcription factor TF Family: C2H2 unknown [Populus trichocarpa]
14 Hb_002886_010 0.1959348313 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000227_100 0.1963009442 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
16 Hb_000684_400 0.1982040022 - - PREDICTED: uncharacterized protein LOC105642159 [Jatropha curcas]
17 Hb_002045_030 0.2016061455 transcription factor TF Family: AUX/IAA hypothetical protein CISIN_1g047687mg [Citrus sinensis]
18 Hb_003090_240 0.20335232 - - hypothetical protein JCGZ_25095 [Jatropha curcas]
19 Hb_000879_220 0.2096354897 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
20 Hb_001832_170 0.2096492199 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]

Gene co-expression network

sample Hb_002968_050 Hb_002968_050 Hb_003261_010 Hb_003261_010 Hb_002968_050--Hb_003261_010 Hb_000200_360 Hb_000200_360 Hb_002968_050--Hb_000200_360 Hb_001959_100 Hb_001959_100 Hb_002968_050--Hb_001959_100 Hb_000510_280 Hb_000510_280 Hb_002968_050--Hb_000510_280 Hb_000264_040 Hb_000264_040 Hb_002968_050--Hb_000264_040 Hb_004586_270 Hb_004586_270 Hb_002968_050--Hb_004586_270 Hb_003261_010--Hb_001959_100 Hb_000340_240 Hb_000340_240 Hb_003261_010--Hb_000340_240 Hb_003261_010--Hb_000200_360 Hb_000220_060 Hb_000220_060 Hb_003261_010--Hb_000220_060 Hb_000329_580 Hb_000329_580 Hb_003261_010--Hb_000329_580 Hb_000200_360--Hb_001959_100 Hb_012633_060 Hb_012633_060 Hb_000200_360--Hb_012633_060 Hb_000227_100 Hb_000227_100 Hb_000200_360--Hb_000227_100 Hb_000684_400 Hb_000684_400 Hb_000200_360--Hb_000684_400 Hb_000200_360--Hb_000340_240 Hb_001959_100--Hb_000340_240 Hb_012760_120 Hb_012760_120 Hb_001959_100--Hb_012760_120 Hb_000538_110 Hb_000538_110 Hb_001959_100--Hb_000538_110 Hb_001959_100--Hb_000227_100 Hb_011214_080 Hb_011214_080 Hb_001959_100--Hb_011214_080 Hb_002592_020 Hb_002592_020 Hb_000510_280--Hb_002592_020 Hb_000445_120 Hb_000445_120 Hb_000510_280--Hb_000445_120 Hb_000510_280--Hb_000264_040 Hb_000094_170 Hb_000094_170 Hb_000510_280--Hb_000094_170 Hb_000438_120 Hb_000438_120 Hb_000510_280--Hb_000438_120 Hb_002886_010 Hb_002886_010 Hb_000264_040--Hb_002886_010 Hb_000264_040--Hb_000445_120 Hb_002759_050 Hb_002759_050 Hb_000264_040--Hb_002759_050 Hb_000301_040 Hb_000301_040 Hb_000264_040--Hb_000301_040 Hb_005730_060 Hb_005730_060 Hb_000264_040--Hb_005730_060 Hb_000264_040--Hb_000200_360 Hb_008112_020 Hb_008112_020 Hb_004586_270--Hb_008112_020 Hb_004586_270--Hb_000227_100 Hb_169383_010 Hb_169383_010 Hb_004586_270--Hb_169383_010 Hb_001195_290 Hb_001195_290 Hb_004586_270--Hb_001195_290 Hb_003090_240 Hb_003090_240 Hb_004586_270--Hb_003090_240 Hb_006472_040 Hb_006472_040 Hb_004586_270--Hb_006472_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0647643 0.0449981 0.947053 2.80413 0 0.0108259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.253089 0.752237 0.041706 0.0793872 4.78476

CAGE analysis