Hb_002759_050

Information

Type -
Description -
Location Contig2759: 24537-26531
Sequence    

Annotation

kegg
ID rcu:RCOM_0394070
description hypothetical protein
nr
ID XP_012092051.1
description PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
swissprot
ID O04523
description Protein ALTERED XYLOGLUCAN 4 OS=Arabidopsis thaliana GN=AXY4 PE=1 SV=1
trembl
ID A0A067JBV5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21782 PE=4 SV=1
Gene Ontology
ID GO:0005794
description protein altered xyloglucan 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28854: 24605-26387
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002759_050 0.0 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
2 Hb_000264_040 0.1205535 - - sugar transporter, putative [Ricinus communis]
3 Hb_002886_010 0.1238835646 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000445_120 0.1614418901 - - ATP binding protein, putative [Ricinus communis]
5 Hb_003261_010 0.163361858 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
6 Hb_000200_360 0.1649407131 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
7 Hb_001959_100 0.165084431 - - ammonium transporter, putative [Ricinus communis]
8 Hb_002534_010 0.1664580494 - - PREDICTED: expansin-A1-like [Jatropha curcas]
9 Hb_001538_080 0.170161981 - - PREDICTED: QWRF motif-containing protein 2 isoform X2 [Jatropha curcas]
10 Hb_000235_040 0.1759696689 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X1 [Populus euphratica]
11 Hb_000975_170 0.178212252 - - PREDICTED: UDP-glucuronic acid decarboxylase 6 isoform X1 [Jatropha curcas]
12 Hb_002968_050 0.1806028068 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
13 Hb_002045_030 0.1807465625 transcription factor TF Family: AUX/IAA hypothetical protein CISIN_1g047687mg [Citrus sinensis]
14 Hb_001913_040 0.1846537974 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000301_040 0.1884931119 - - PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]
16 Hb_001832_170 0.1886100859 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
17 Hb_002400_300 0.189325489 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
18 Hb_001124_230 0.1924456021 - - PREDICTED: divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic [Jatropha curcas]
19 Hb_000438_120 0.1952891827 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
20 Hb_029879_150 0.1963392202 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002759_050 Hb_002759_050 Hb_000264_040 Hb_000264_040 Hb_002759_050--Hb_000264_040 Hb_002886_010 Hb_002886_010 Hb_002759_050--Hb_002886_010 Hb_000445_120 Hb_000445_120 Hb_002759_050--Hb_000445_120 Hb_003261_010 Hb_003261_010 Hb_002759_050--Hb_003261_010 Hb_000200_360 Hb_000200_360 Hb_002759_050--Hb_000200_360 Hb_001959_100 Hb_001959_100 Hb_002759_050--Hb_001959_100 Hb_000264_040--Hb_002886_010 Hb_000264_040--Hb_000445_120 Hb_000301_040 Hb_000301_040 Hb_000264_040--Hb_000301_040 Hb_005730_060 Hb_005730_060 Hb_000264_040--Hb_005730_060 Hb_000264_040--Hb_000200_360 Hb_002886_010--Hb_000445_120 Hb_002886_010--Hb_000301_040 Hb_002886_010--Hb_001959_100 Hb_002886_010--Hb_000200_360 Hb_000189_440 Hb_000189_440 Hb_000445_120--Hb_000189_440 Hb_000805_010 Hb_000805_010 Hb_000445_120--Hb_000805_010 Hb_000649_040 Hb_000649_040 Hb_000445_120--Hb_000649_040 Hb_003261_010--Hb_001959_100 Hb_000340_240 Hb_000340_240 Hb_003261_010--Hb_000340_240 Hb_003261_010--Hb_000200_360 Hb_000220_060 Hb_000220_060 Hb_003261_010--Hb_000220_060 Hb_000329_580 Hb_000329_580 Hb_003261_010--Hb_000329_580 Hb_002968_050 Hb_002968_050 Hb_003261_010--Hb_002968_050 Hb_000200_360--Hb_001959_100 Hb_012633_060 Hb_012633_060 Hb_000200_360--Hb_012633_060 Hb_000227_100 Hb_000227_100 Hb_000200_360--Hb_000227_100 Hb_000684_400 Hb_000684_400 Hb_000200_360--Hb_000684_400 Hb_000200_360--Hb_000340_240 Hb_001959_100--Hb_000340_240 Hb_012760_120 Hb_012760_120 Hb_001959_100--Hb_012760_120 Hb_000538_110 Hb_000538_110 Hb_001959_100--Hb_000538_110 Hb_001959_100--Hb_000227_100 Hb_011214_080 Hb_011214_080 Hb_001959_100--Hb_011214_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.201248 0.268936 5.82054 18.4818 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.265953 1.76915 2.44878 1.63574 26.6041

CAGE analysis