Hb_000301_040

Information

Type -
Description -
Location Contig301: 168026-169843
Sequence    

Annotation

kegg
ID rcu:RCOM_1408060
description hypothetical protein
nr
ID XP_012078604.1
description PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K866
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13197 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31703: 168769-168907
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000301_040 0.0 - - PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]
2 Hb_000264_040 0.1241476159 - - sugar transporter, putative [Ricinus communis]
3 Hb_169383_010 0.1439917286 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
4 Hb_001006_110 0.1443806018 - - PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
5 Hb_001959_100 0.1506439727 - - ammonium transporter, putative [Ricinus communis]
6 Hb_002886_010 0.1537957574 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000200_360 0.1578357608 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
8 Hb_005730_060 0.1588326123 - - PREDICTED: inorganic pyrophosphatase 1-like [Jatropha curcas]
9 Hb_029879_150 0.1634992696 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
10 Hb_008112_020 0.1638047013 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
11 Hb_010810_060 0.171883932 - - sterol desaturase, putative [Ricinus communis]
12 Hb_001210_060 0.1722592503 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
13 Hb_004586_270 0.1725838399 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2 isoform X2 [Jatropha curcas]
14 Hb_000227_100 0.1727372954 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
15 Hb_000684_400 0.1740969023 - - PREDICTED: uncharacterized protein LOC105642159 [Jatropha curcas]
16 Hb_001474_060 0.1749841473 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
17 Hb_001538_080 0.1759285234 - - PREDICTED: QWRF motif-containing protein 2 isoform X2 [Jatropha curcas]
18 Hb_002805_280 0.1763356912 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
19 Hb_003162_060 0.177109424 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
20 Hb_001500_130 0.1808288536 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]

Gene co-expression network

sample Hb_000301_040 Hb_000301_040 Hb_000264_040 Hb_000264_040 Hb_000301_040--Hb_000264_040 Hb_169383_010 Hb_169383_010 Hb_000301_040--Hb_169383_010 Hb_001006_110 Hb_001006_110 Hb_000301_040--Hb_001006_110 Hb_001959_100 Hb_001959_100 Hb_000301_040--Hb_001959_100 Hb_002886_010 Hb_002886_010 Hb_000301_040--Hb_002886_010 Hb_000200_360 Hb_000200_360 Hb_000301_040--Hb_000200_360 Hb_000264_040--Hb_002886_010 Hb_000445_120 Hb_000445_120 Hb_000264_040--Hb_000445_120 Hb_002759_050 Hb_002759_050 Hb_000264_040--Hb_002759_050 Hb_005730_060 Hb_005730_060 Hb_000264_040--Hb_005730_060 Hb_000264_040--Hb_000200_360 Hb_006472_040 Hb_006472_040 Hb_169383_010--Hb_006472_040 Hb_004096_210 Hb_004096_210 Hb_169383_010--Hb_004096_210 Hb_008112_020 Hb_008112_020 Hb_169383_010--Hb_008112_020 Hb_001195_290 Hb_001195_290 Hb_169383_010--Hb_001195_290 Hb_019654_180 Hb_019654_180 Hb_169383_010--Hb_019654_180 Hb_000618_110 Hb_000618_110 Hb_169383_010--Hb_000618_110 Hb_000031_210 Hb_000031_210 Hb_001006_110--Hb_000031_210 Hb_001500_130 Hb_001500_130 Hb_001006_110--Hb_001500_130 Hb_000083_220 Hb_000083_220 Hb_001006_110--Hb_000083_220 Hb_002387_010 Hb_002387_010 Hb_001006_110--Hb_002387_010 Hb_000076_240 Hb_000076_240 Hb_001006_110--Hb_000076_240 Hb_000318_310 Hb_000318_310 Hb_001006_110--Hb_000318_310 Hb_000340_240 Hb_000340_240 Hb_001959_100--Hb_000340_240 Hb_012760_120 Hb_012760_120 Hb_001959_100--Hb_012760_120 Hb_001959_100--Hb_000200_360 Hb_000538_110 Hb_000538_110 Hb_001959_100--Hb_000538_110 Hb_000227_100 Hb_000227_100 Hb_001959_100--Hb_000227_100 Hb_011214_080 Hb_011214_080 Hb_001959_100--Hb_011214_080 Hb_002886_010--Hb_000445_120 Hb_002886_010--Hb_002759_050 Hb_002886_010--Hb_001959_100 Hb_002886_010--Hb_000200_360 Hb_012633_060 Hb_012633_060 Hb_000200_360--Hb_012633_060 Hb_000200_360--Hb_000227_100 Hb_003261_010 Hb_003261_010 Hb_000200_360--Hb_003261_010 Hb_000684_400 Hb_000684_400 Hb_000200_360--Hb_000684_400 Hb_000200_360--Hb_000340_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0119608 0.0613277 0.721149 1.29876 0 0.0104787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.163309 0.0214145 0.121219 0.0170695 1.98046

CAGE analysis