Hb_000684_400

Information

Type -
Description -
Location Contig684: 399695-402076
Sequence    

Annotation

kegg
ID cit:102618342
description uncharacterized LOC102618342
nr
ID XP_012082261.1
description PREDICTED: uncharacterized protein LOC105642159 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061ERT1
description 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Theobroma cacao GN=TCM_022073 PE=4 SV=1
Gene Ontology
ID GO:0009535
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54025: 399701-402012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_400 0.0 - - PREDICTED: uncharacterized protein LOC105642159 [Jatropha curcas]
2 Hb_001124_230 0.1268252713 - - PREDICTED: divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic [Jatropha curcas]
3 Hb_169383_010 0.1276614665 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
4 Hb_006472_040 0.1284598431 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
5 Hb_000227_100 0.1287275878 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
6 Hb_008112_020 0.1296360042 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
7 Hb_000005_370 0.1311623597 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634024 [Jatropha curcas]
8 Hb_001266_160 0.1331438539 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
9 Hb_009393_140 0.1423795854 - - PREDICTED: uncharacterized protein LOC105638053 isoform X1 [Jatropha curcas]
10 Hb_000317_180 0.1450364721 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
11 Hb_004979_050 0.1482571163 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
12 Hb_000805_010 0.1510120856 - - PREDICTED: uncharacterized protein LOC105629931 [Jatropha curcas]
13 Hb_001257_050 0.1520703549 - - PREDICTED: LOW QUALITY PROTEIN: protein YLS9 [Jatropha curcas]
14 Hb_000200_360 0.1545215323 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
15 Hb_000679_320 0.1582342304 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]
16 Hb_000029_330 0.1588227581 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
17 Hb_001474_060 0.159639872 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
18 Hb_000208_270 0.1598894831 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
19 Hb_000139_060 0.1603903496 - - Photosystem I reaction center subunit II, chloroplast precursor, putative [Ricinus communis]
20 Hb_000359_160 0.1628897326 - - PREDICTED: protein CAJ1 [Jatropha curcas]

Gene co-expression network

sample Hb_000684_400 Hb_000684_400 Hb_001124_230 Hb_001124_230 Hb_000684_400--Hb_001124_230 Hb_169383_010 Hb_169383_010 Hb_000684_400--Hb_169383_010 Hb_006472_040 Hb_006472_040 Hb_000684_400--Hb_006472_040 Hb_000227_100 Hb_000227_100 Hb_000684_400--Hb_000227_100 Hb_008112_020 Hb_008112_020 Hb_000684_400--Hb_008112_020 Hb_000005_370 Hb_000005_370 Hb_000684_400--Hb_000005_370 Hb_000616_030 Hb_000616_030 Hb_001124_230--Hb_000616_030 Hb_001124_230--Hb_000005_370 Hb_000612_090 Hb_000612_090 Hb_001124_230--Hb_000612_090 Hb_001124_230--Hb_008112_020 Hb_000300_680 Hb_000300_680 Hb_001124_230--Hb_000300_680 Hb_169383_010--Hb_006472_040 Hb_004096_210 Hb_004096_210 Hb_169383_010--Hb_004096_210 Hb_169383_010--Hb_008112_020 Hb_001195_290 Hb_001195_290 Hb_169383_010--Hb_001195_290 Hb_019654_180 Hb_019654_180 Hb_169383_010--Hb_019654_180 Hb_000618_110 Hb_000618_110 Hb_169383_010--Hb_000618_110 Hb_006472_040--Hb_008112_020 Hb_006472_040--Hb_001195_290 Hb_000679_320 Hb_000679_320 Hb_006472_040--Hb_000679_320 Hb_000317_180 Hb_000317_180 Hb_006472_040--Hb_000317_180 Hb_009393_140 Hb_009393_140 Hb_006472_040--Hb_009393_140 Hb_012760_120 Hb_012760_120 Hb_000227_100--Hb_012760_120 Hb_000227_100--Hb_008112_020 Hb_004979_050 Hb_004979_050 Hb_000227_100--Hb_004979_050 Hb_003090_240 Hb_003090_240 Hb_000227_100--Hb_003090_240 Hb_001959_100 Hb_001959_100 Hb_000227_100--Hb_001959_100 Hb_008112_020--Hb_001195_290 Hb_022693_010 Hb_022693_010 Hb_008112_020--Hb_022693_010 Hb_008112_020--Hb_004979_050 Hb_008112_020--Hb_000679_320 Hb_003929_240 Hb_003929_240 Hb_000005_370--Hb_003929_240 Hb_003849_070 Hb_003849_070 Hb_000005_370--Hb_003849_070 Hb_001474_060 Hb_001474_060 Hb_000005_370--Hb_001474_060 Hb_001832_170 Hb_001832_170 Hb_000005_370--Hb_001832_170 Hb_001257_050 Hb_001257_050 Hb_000005_370--Hb_001257_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.778297 2.32046 13.6131 24.1282 0.760263 3.18779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.05584 2.05095 1.05238 1.61726 53.3374

CAGE analysis