Hb_000005_370

Information

Type transcription factor
Description TF Family: mTERF
Location Contig5: 473872-474783
Sequence    

Annotation

kegg
ID rcu:RCOM_0485210
description hypothetical protein
nr
ID XP_012072162.1
description PREDICTED: uncharacterized protein LOC105634024 [Jatropha curcas]
swissprot
ID Q8R3J4
description Transcription termination factor 3, mitochondrial OS=Mus musculus GN=Mterf3 PE=2 SV=1
trembl
ID A0A067L0I6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04653 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mterf-like protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45724: 475570-484424
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_370 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634024 [Jatropha curcas]
2 Hb_003929_240 0.1021004735 - - PREDICTED: uncharacterized protein LOC105643616 isoform X2 [Jatropha curcas]
3 Hb_003849_070 0.1079914774 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
4 Hb_001474_060 0.1113948317 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
5 Hb_001124_230 0.1127760695 - - PREDICTED: divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic [Jatropha curcas]
6 Hb_001832_170 0.1149478351 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
7 Hb_001257_050 0.1170879055 - - PREDICTED: LOW QUALITY PROTEIN: protein YLS9 [Jatropha curcas]
8 Hb_000103_130 0.1285471357 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
9 Hb_000684_400 0.1311623597 - - PREDICTED: uncharacterized protein LOC105642159 [Jatropha curcas]
10 Hb_000008_070 0.1316699552 - - kinase, putative [Ricinus communis]
11 Hb_001538_080 0.131801662 - - PREDICTED: QWRF motif-containing protein 2 isoform X2 [Jatropha curcas]
12 Hb_000139_060 0.132562043 - - Photosystem I reaction center subunit II, chloroplast precursor, putative [Ricinus communis]
13 Hb_003018_150 0.1327448538 - - PREDICTED: uncharacterized protein LOC105628869 [Jatropha curcas]
14 Hb_000612_090 0.1336330934 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
15 Hb_006750_010 0.1340448112 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
16 Hb_001999_070 0.1414431406 - - PREDICTED: ammonium transporter 1 member 3 [Jatropha curcas]
17 Hb_001210_060 0.1431534744 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
18 Hb_028396_020 0.1438329471 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
19 Hb_001541_200 0.1442693527 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
20 Hb_003835_080 0.1452274575 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000005_370 Hb_000005_370 Hb_003929_240 Hb_003929_240 Hb_000005_370--Hb_003929_240 Hb_003849_070 Hb_003849_070 Hb_000005_370--Hb_003849_070 Hb_001474_060 Hb_001474_060 Hb_000005_370--Hb_001474_060 Hb_001124_230 Hb_001124_230 Hb_000005_370--Hb_001124_230 Hb_001832_170 Hb_001832_170 Hb_000005_370--Hb_001832_170 Hb_001257_050 Hb_001257_050 Hb_000005_370--Hb_001257_050 Hb_003929_240--Hb_001257_050 Hb_003018_150 Hb_003018_150 Hb_003929_240--Hb_003018_150 Hb_006750_010 Hb_006750_010 Hb_003929_240--Hb_006750_010 Hb_001699_080 Hb_001699_080 Hb_003929_240--Hb_001699_080 Hb_000103_130 Hb_000103_130 Hb_003929_240--Hb_000103_130 Hb_016924_010 Hb_016924_010 Hb_003849_070--Hb_016924_010 Hb_001252_030 Hb_001252_030 Hb_003849_070--Hb_001252_030 Hb_032631_020 Hb_032631_020 Hb_003849_070--Hb_032631_020 Hb_001999_070 Hb_001999_070 Hb_003849_070--Hb_001999_070 Hb_020141_030 Hb_020141_030 Hb_003849_070--Hb_020141_030 Hb_001474_060--Hb_001257_050 Hb_010810_060 Hb_010810_060 Hb_001474_060--Hb_010810_060 Hb_000008_070 Hb_000008_070 Hb_001474_060--Hb_000008_070 Hb_005730_060 Hb_005730_060 Hb_001474_060--Hb_005730_060 Hb_019654_180 Hb_019654_180 Hb_001474_060--Hb_019654_180 Hb_000616_030 Hb_000616_030 Hb_001124_230--Hb_000616_030 Hb_000612_090 Hb_000612_090 Hb_001124_230--Hb_000612_090 Hb_008112_020 Hb_008112_020 Hb_001124_230--Hb_008112_020 Hb_000300_680 Hb_000300_680 Hb_001124_230--Hb_000300_680 Hb_000684_400 Hb_000684_400 Hb_001124_230--Hb_000684_400 Hb_000417_220 Hb_000417_220 Hb_001832_170--Hb_000417_220 Hb_002400_300 Hb_002400_300 Hb_001832_170--Hb_002400_300 Hb_000552_010 Hb_000552_010 Hb_001832_170--Hb_000552_010 Hb_000270_340 Hb_000270_340 Hb_001832_170--Hb_000270_340 Hb_000139_060 Hb_000139_060 Hb_001832_170--Hb_000139_060 Hb_001257_050--Hb_000008_070 Hb_001257_050--Hb_000139_060 Hb_001541_200 Hb_001541_200 Hb_001257_050--Hb_001541_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.502942 2.52014 12.8931 27.0635 1.48952 1.2066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.02445 1.02944 0.572956 3.13943 38.1862

CAGE analysis