Hb_000139_060

Information

Type -
Description -
Location Contig139: 89421-90044
Sequence    

Annotation

kegg
ID rcu:RCOM_0677760
description Photosystem I reaction center subunit II, chloroplast precursor, putative
nr
ID XP_002516772.1
description Photosystem I reaction center subunit II, chloroplast precursor, putative [Ricinus communis]
swissprot
ID P32869
description Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1
trembl
ID B9RSQ3
description Photosystem I reaction center subunit II, chloroplast, putative OS=Ricinus communis GN=RCOM_0677760 PE=4 SV=1
Gene Ontology
ID GO:0009538
description psi reaction center subunit ii

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 013_L03.ab1: 89368-90131 , 028_K22.ab1: 89532-90131 , 032_A22.ab1: 89520-90111 , 035_H11.ab1: 89360-90111 , 039_G03.ab1: 89288-89670

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_060 0.0 - - Photosystem I reaction center subunit II, chloroplast precursor, putative [Ricinus communis]
2 Hb_008226_010 0.0903065354 - - PREDICTED: uncharacterized protein LOC105649179 [Jatropha curcas]
3 Hb_001541_200 0.0962426293 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
4 Hb_001557_010 0.1062633572 - - PREDICTED: extensin [Jatropha curcas]
5 Hb_005066_040 0.1063686565 - - Reticuline oxidase precursor, putative [Ricinus communis]
6 Hb_000008_070 0.1071347928 - - kinase, putative [Ricinus communis]
7 Hb_001657_020 0.1078679357 - - heat shock family protein [Populus trichocarpa]
8 Hb_001257_050 0.1087082265 - - PREDICTED: LOW QUALITY PROTEIN: protein YLS9 [Jatropha curcas]
9 Hb_000088_140 0.1096437389 - - -
10 Hb_000134_080 0.1100340798 - - synaptotagmin, putative [Ricinus communis]
11 Hb_002338_040 0.1161126548 - - conserved hypothetical protein [Ricinus communis]
12 Hb_026549_060 0.1168083925 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
13 Hb_020956_030 0.1173475794 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
14 Hb_000920_100 0.1229477236 - - o-methyltransferase, putative [Ricinus communis]
15 Hb_005183_050 0.1232842888 - - hypothetical protein RCOM_1590900 [Ricinus communis]
16 Hb_001433_090 0.1302219554 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
17 Hb_002119_150 0.130403993 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
18 Hb_003162_060 0.1307983535 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
19 Hb_000661_270 0.1311883765 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
20 Hb_033681_030 0.1317767266 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]

Gene co-expression network

sample Hb_000139_060 Hb_000139_060 Hb_008226_010 Hb_008226_010 Hb_000139_060--Hb_008226_010 Hb_001541_200 Hb_001541_200 Hb_000139_060--Hb_001541_200 Hb_001557_010 Hb_001557_010 Hb_000139_060--Hb_001557_010 Hb_005066_040 Hb_005066_040 Hb_000139_060--Hb_005066_040 Hb_000008_070 Hb_000008_070 Hb_000139_060--Hb_000008_070 Hb_001657_020 Hb_001657_020 Hb_000139_060--Hb_001657_020 Hb_000134_080 Hb_000134_080 Hb_008226_010--Hb_000134_080 Hb_015234_010 Hb_015234_010 Hb_008226_010--Hb_015234_010 Hb_002338_040 Hb_002338_040 Hb_008226_010--Hb_002338_040 Hb_000260_520 Hb_000260_520 Hb_008226_010--Hb_000260_520 Hb_008226_010--Hb_005066_040 Hb_001541_200--Hb_001657_020 Hb_026549_060 Hb_026549_060 Hb_001541_200--Hb_026549_060 Hb_020956_030 Hb_020956_030 Hb_001541_200--Hb_020956_030 Hb_001433_090 Hb_001433_090 Hb_001541_200--Hb_001433_090 Hb_005183_050 Hb_005183_050 Hb_001541_200--Hb_005183_050 Hb_003162_060 Hb_003162_060 Hb_001541_200--Hb_003162_060 Hb_001557_010--Hb_005183_050 Hb_001557_010--Hb_026549_060 Hb_001557_010--Hb_001433_090 Hb_005000_150 Hb_005000_150 Hb_001557_010--Hb_005000_150 Hb_001557_010--Hb_001541_200 Hb_000749_300 Hb_000749_300 Hb_001557_010--Hb_000749_300 Hb_005843_010 Hb_005843_010 Hb_005066_040--Hb_005843_010 Hb_009315_010 Hb_009315_010 Hb_005066_040--Hb_009315_010 Hb_022092_070 Hb_022092_070 Hb_005066_040--Hb_022092_070 Hb_002119_150 Hb_002119_150 Hb_005066_040--Hb_002119_150 Hb_008518_060 Hb_008518_060 Hb_005066_040--Hb_008518_060 Hb_000739_280 Hb_000739_280 Hb_005066_040--Hb_000739_280 Hb_001257_050 Hb_001257_050 Hb_000008_070--Hb_001257_050 Hb_001278_020 Hb_001278_020 Hb_000008_070--Hb_001278_020 Hb_000008_070--Hb_001541_200 Hb_002246_030 Hb_002246_030 Hb_000008_070--Hb_002246_030 Hb_001474_060 Hb_001474_060 Hb_000008_070--Hb_001474_060 Hb_001657_020--Hb_001433_090 Hb_001657_020--Hb_020956_030 Hb_001657_020--Hb_005183_050 Hb_003152_020 Hb_003152_020 Hb_001657_020--Hb_003152_020 Hb_001657_020--Hb_026549_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.04964 24.9128 70.5575 193.766 2.99448 11.4074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.76379 0.749058 0.922213 9.011 324.068

CAGE analysis