Hb_001557_010

Information

Type -
Description -
Location Contig1557: 19914-21994
Sequence    

Annotation

kegg
ID pop:POPTR_0008s08240g
description hypothetical protein
nr
ID XP_012068530.1
description PREDICTED: extensin [Jatropha curcas]
swissprot
ID Q9FNQ2
description PLASMODESMATA CALLOSE-BINDING PROTEIN 1 OS=Arabidopsis thaliana GN=PDCB1 PE=1 SV=1
trembl
ID U5G1V3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s08240g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001557_010 0.0 - - PREDICTED: extensin [Jatropha curcas]
2 Hb_005183_050 0.0859726576 - - hypothetical protein RCOM_1590900 [Ricinus communis]
3 Hb_026549_060 0.090507236 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
4 Hb_001433_090 0.0919789575 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
5 Hb_005000_150 0.095982282 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001541_200 0.1007317016 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
7 Hb_000749_300 0.101425936 - - PREDICTED: uncharacterized protein LOC105129180 [Populus euphratica]
8 Hb_001512_130 0.1034759077 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
9 Hb_000088_140 0.1054150885 - - -
10 Hb_000139_060 0.1062633572 - - Photosystem I reaction center subunit II, chloroplast precursor, putative [Ricinus communis]
11 Hb_001657_020 0.1101670246 - - heat shock family protein [Populus trichocarpa]
12 Hb_005843_010 0.111767164 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
13 Hb_005066_040 0.1124069887 - - Reticuline oxidase precursor, putative [Ricinus communis]
14 Hb_000083_210 0.1125714607 - - Major facilitator superfamily protein, putative [Theobroma cacao]
15 Hb_000017_180 0.112827168 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
16 Hb_010589_010 0.1130632773 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
17 Hb_000395_230 0.1148307085 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Vitis vinifera]
18 Hb_136408_040 0.1150486689 - - PREDICTED: protein NDR1 [Jatropha curcas]
19 Hb_022092_070 0.1159205862 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5 [Jatropha curcas]
20 Hb_001500_130 0.1175999643 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]

Gene co-expression network

sample Hb_001557_010 Hb_001557_010 Hb_005183_050 Hb_005183_050 Hb_001557_010--Hb_005183_050 Hb_026549_060 Hb_026549_060 Hb_001557_010--Hb_026549_060 Hb_001433_090 Hb_001433_090 Hb_001557_010--Hb_001433_090 Hb_005000_150 Hb_005000_150 Hb_001557_010--Hb_005000_150 Hb_001541_200 Hb_001541_200 Hb_001557_010--Hb_001541_200 Hb_000749_300 Hb_000749_300 Hb_001557_010--Hb_000749_300 Hb_005183_050--Hb_001433_090 Hb_000017_180 Hb_000017_180 Hb_005183_050--Hb_000017_180 Hb_000002_110 Hb_000002_110 Hb_005183_050--Hb_000002_110 Hb_003152_020 Hb_003152_020 Hb_005183_050--Hb_003152_020 Hb_005183_050--Hb_026549_060 Hb_005842_010 Hb_005842_010 Hb_005183_050--Hb_005842_010 Hb_026549_060--Hb_001433_090 Hb_026549_060--Hb_001541_200 Hb_000958_090 Hb_000958_090 Hb_026549_060--Hb_000958_090 Hb_020956_030 Hb_020956_030 Hb_026549_060--Hb_020956_030 Hb_005010_030 Hb_005010_030 Hb_026549_060--Hb_005010_030 Hb_001433_090--Hb_000002_110 Hb_010589_010 Hb_010589_010 Hb_001433_090--Hb_010589_010 Hb_001500_130 Hb_001500_130 Hb_001433_090--Hb_001500_130 Hb_001433_090--Hb_020956_030 Hb_001140_290 Hb_001140_290 Hb_005000_150--Hb_001140_290 Hb_002151_070 Hb_002151_070 Hb_005000_150--Hb_002151_070 Hb_001514_050 Hb_001514_050 Hb_005000_150--Hb_001514_050 Hb_005000_150--Hb_003152_020 Hb_001397_020 Hb_001397_020 Hb_005000_150--Hb_001397_020 Hb_001289_070 Hb_001289_070 Hb_005000_150--Hb_001289_070 Hb_001657_020 Hb_001657_020 Hb_001541_200--Hb_001657_020 Hb_001541_200--Hb_020956_030 Hb_001541_200--Hb_001433_090 Hb_001541_200--Hb_005183_050 Hb_003162_060 Hb_003162_060 Hb_001541_200--Hb_003162_060 Hb_001902_040 Hb_001902_040 Hb_000749_300--Hb_001902_040 Hb_002986_030 Hb_002986_030 Hb_000749_300--Hb_002986_030 Hb_000083_210 Hb_000083_210 Hb_000749_300--Hb_000083_210 Hb_185726_010 Hb_185726_010 Hb_000749_300--Hb_185726_010 Hb_000462_010 Hb_000462_010 Hb_000749_300--Hb_000462_010 Hb_015934_090 Hb_015934_090 Hb_000749_300--Hb_015934_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.377468 0.797785 2.43128 0.0424082 0.0744447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0458728 2.88816

CAGE analysis