Hb_002338_040

Information

Type -
Description -
Location Contig2338: 83452-84044
Sequence    

Annotation

kegg
ID rcu:RCOM_0969450
description hypothetical protein
nr
ID XP_002524421.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SEK2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0969450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002338_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_033681_030 0.0694606217 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
3 Hb_002044_070 0.0931559574 - - Chlorophyll a-b binding protein 3, chloroplastic [Theobroma cacao]
4 Hb_005483_040 0.0997078512 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
5 Hb_086300_010 0.1058552053 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
6 Hb_002149_060 0.1124527723 - - catalytic, putative [Ricinus communis]
7 Hb_002329_050 0.1126974541 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008226_010 0.1137252658 - - PREDICTED: uncharacterized protein LOC105649179 [Jatropha curcas]
9 Hb_000134_080 0.1137781746 - - synaptotagmin, putative [Ricinus communis]
10 Hb_000139_060 0.1161126548 - - Photosystem I reaction center subunit II, chloroplast precursor, putative [Ricinus communis]
11 Hb_001488_160 0.1163351254 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
12 Hb_006291_050 0.1167884141 - - PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_005675_030 0.1169166196 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
14 Hb_008195_090 0.1188077924 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003162_060 0.1189744256 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
16 Hb_020956_030 0.1195966417 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
17 Hb_001699_110 0.1222145801 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
18 Hb_006573_240 0.1223863174 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
19 Hb_003090_240 0.1244544501 - - hypothetical protein JCGZ_25095 [Jatropha curcas]
20 Hb_003358_030 0.1251204085 - - ankyrin-kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002338_040 Hb_002338_040 Hb_033681_030 Hb_033681_030 Hb_002338_040--Hb_033681_030 Hb_002044_070 Hb_002044_070 Hb_002338_040--Hb_002044_070 Hb_005483_040 Hb_005483_040 Hb_002338_040--Hb_005483_040 Hb_086300_010 Hb_086300_010 Hb_002338_040--Hb_086300_010 Hb_002149_060 Hb_002149_060 Hb_002338_040--Hb_002149_060 Hb_002329_050 Hb_002329_050 Hb_002338_040--Hb_002329_050 Hb_033681_030--Hb_086300_010 Hb_008195_090 Hb_008195_090 Hb_033681_030--Hb_008195_090 Hb_020956_030 Hb_020956_030 Hb_033681_030--Hb_020956_030 Hb_000477_090 Hb_000477_090 Hb_033681_030--Hb_000477_090 Hb_033681_030--Hb_005483_040 Hb_002413_050 Hb_002413_050 Hb_002044_070--Hb_002413_050 Hb_011537_130 Hb_011537_130 Hb_002044_070--Hb_011537_130 Hb_029622_060 Hb_029622_060 Hb_002044_070--Hb_029622_060 Hb_005675_030 Hb_005675_030 Hb_002044_070--Hb_005675_030 Hb_002534_090 Hb_002534_090 Hb_002044_070--Hb_002534_090 Hb_007595_020 Hb_007595_020 Hb_002044_070--Hb_007595_020 Hb_005483_040--Hb_002329_050 Hb_018487_040 Hb_018487_040 Hb_005483_040--Hb_018487_040 Hb_002250_040 Hb_002250_040 Hb_005483_040--Hb_002250_040 Hb_000883_080 Hb_000883_080 Hb_005483_040--Hb_000883_080 Hb_006718_030 Hb_006718_030 Hb_005483_040--Hb_006718_030 Hb_011362_010 Hb_011362_010 Hb_005483_040--Hb_011362_010 Hb_147028_010 Hb_147028_010 Hb_086300_010--Hb_147028_010 Hb_086300_010--Hb_020956_030 Hb_003162_060 Hb_003162_060 Hb_086300_010--Hb_003162_060 Hb_028491_010 Hb_028491_010 Hb_086300_010--Hb_028491_010 Hb_005532_030 Hb_005532_030 Hb_086300_010--Hb_005532_030 Hb_002149_060--Hb_005483_040 Hb_002149_060--Hb_011362_010 Hb_002149_060--Hb_002329_050 Hb_022832_050 Hb_022832_050 Hb_002149_060--Hb_022832_050 Hb_002149_060--Hb_033681_030 Hb_000268_050 Hb_000268_050 Hb_002149_060--Hb_000268_050 Hb_002329_050--Hb_000268_050 Hb_002329_050--Hb_000883_080 Hb_002329_050--Hb_011362_010 Hb_002329_050--Hb_018487_040 Hb_000928_260 Hb_000928_260 Hb_002329_050--Hb_000928_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0552193 0.579245 4.01432 6.98366 0.207729 0.346814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.252489 17.7286

CAGE analysis