Hb_002149_060

Information

Type -
Description -
Location Contig2149: 46404-49990
Sequence    

Annotation

kegg
ID rcu:RCOM_1213130
description catalytic, putative (EC:2.4.1.224)
nr
ID XP_002524591.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q9FFN2
description Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2
trembl
ID B9SF22
description Catalytic, putative OS=Ricinus communis GN=RCOM_1213130 PE=4 SV=1
Gene Ontology
ID GO:0050508
description probable glycosyltransferase at5g03795

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002149_060 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_005483_040 0.083052325 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
3 Hb_011362_010 0.0911458588 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
4 Hb_002329_050 0.0966992703 - - conserved hypothetical protein [Ricinus communis]
5 Hb_022832_050 0.0971294329 - - PREDICTED: protein argonaute 16 isoform X1 [Sesamum indicum]
6 Hb_033681_030 0.097316341 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
7 Hb_000268_050 0.1007776564 - - PREDICTED: tetrapyrrole-binding protein, chloroplastic [Jatropha curcas]
8 Hb_000883_080 0.1018410847 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_002338_040 0.1124527723 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002250_040 0.1150713564 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
11 Hb_000160_120 0.1159106561 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000540_080 0.1167944357 - - PREDICTED: laccase-17 [Jatropha curcas]
13 Hb_096907_010 0.1170691896 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
14 Hb_001437_170 0.1171374115 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
15 Hb_000928_260 0.1174143076 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
16 Hb_144550_010 0.1188945409 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
17 Hb_005062_100 0.1190111463 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
18 Hb_018487_040 0.1195187289 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
19 Hb_003528_100 0.1198064496 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
20 Hb_006718_030 0.1203569487 - - ATPase, F1 complex, gamma subunit protein [Theobroma cacao]

Gene co-expression network

sample Hb_002149_060 Hb_002149_060 Hb_005483_040 Hb_005483_040 Hb_002149_060--Hb_005483_040 Hb_011362_010 Hb_011362_010 Hb_002149_060--Hb_011362_010 Hb_002329_050 Hb_002329_050 Hb_002149_060--Hb_002329_050 Hb_022832_050 Hb_022832_050 Hb_002149_060--Hb_022832_050 Hb_033681_030 Hb_033681_030 Hb_002149_060--Hb_033681_030 Hb_000268_050 Hb_000268_050 Hb_002149_060--Hb_000268_050 Hb_005483_040--Hb_002329_050 Hb_018487_040 Hb_018487_040 Hb_005483_040--Hb_018487_040 Hb_002250_040 Hb_002250_040 Hb_005483_040--Hb_002250_040 Hb_000883_080 Hb_000883_080 Hb_005483_040--Hb_000883_080 Hb_006718_030 Hb_006718_030 Hb_005483_040--Hb_006718_030 Hb_005483_040--Hb_011362_010 Hb_011362_010--Hb_000268_050 Hb_011362_010--Hb_002329_050 Hb_000540_080 Hb_000540_080 Hb_011362_010--Hb_000540_080 Hb_011362_010--Hb_000883_080 Hb_000160_120 Hb_000160_120 Hb_011362_010--Hb_000160_120 Hb_096907_010 Hb_096907_010 Hb_011362_010--Hb_096907_010 Hb_002329_050--Hb_000268_050 Hb_002329_050--Hb_000883_080 Hb_002329_050--Hb_018487_040 Hb_000928_260 Hb_000928_260 Hb_002329_050--Hb_000928_260 Hb_022832_050--Hb_005483_040 Hb_022832_050--Hb_000883_080 Hb_022832_050--Hb_018487_040 Hb_022832_050--Hb_002250_040 Hb_018202_040 Hb_018202_040 Hb_022832_050--Hb_018202_040 Hb_002338_040 Hb_002338_040 Hb_033681_030--Hb_002338_040 Hb_086300_010 Hb_086300_010 Hb_033681_030--Hb_086300_010 Hb_008195_090 Hb_008195_090 Hb_033681_030--Hb_008195_090 Hb_020956_030 Hb_020956_030 Hb_033681_030--Hb_020956_030 Hb_000477_090 Hb_000477_090 Hb_033681_030--Hb_000477_090 Hb_033681_030--Hb_005483_040 Hb_003528_100 Hb_003528_100 Hb_000268_050--Hb_003528_100 Hb_000268_050--Hb_000160_120 Hb_001437_170 Hb_001437_170 Hb_000268_050--Hb_001437_170 Hb_000268_050--Hb_096907_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0110182 0.120484 0.226495 0.0133385 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.549546

CAGE analysis