Hb_006718_030

Information

Type -
Description -
Location Contig6718: 14618-15293
Sequence    

Annotation

kegg
ID tcc:TCM_030229
description ATPase, F1 complex, gamma subunit protein
nr
ID XP_007026083.1
description ATPase, F1 complex, gamma subunit protein [Theobroma cacao]
swissprot
ID Q01908
description ATP synthase gamma chain 1, chloroplastic OS=Arabidopsis thaliana GN=ATPC1 PE=1 SV=1
trembl
ID A0A061GFT3
description ATPase, F1 complex, gamma subunit protein OS=Theobroma cacao GN=TCM_030229 PE=3 SV=1
Gene Ontology
ID GO:0045261
description atp synthase gamma chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006718_030 0.0 - - ATPase, F1 complex, gamma subunit protein [Theobroma cacao]
2 Hb_002329_050 0.0653228059 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000883_080 0.0686148144 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_005483_040 0.070024443 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
5 Hb_000268_050 0.0706738807 - - PREDICTED: tetrapyrrole-binding protein, chloroplastic [Jatropha curcas]
6 Hb_000363_070 0.0758624707 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000140_040 0.0766262845 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
8 Hb_011362_010 0.0792566797 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
9 Hb_003787_030 0.0799409438 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000540_080 0.0804187777 - - PREDICTED: laccase-17 [Jatropha curcas]
11 Hb_045260_010 0.0838276921 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
12 Hb_000928_260 0.0840731539 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
13 Hb_007534_080 0.0846117919 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
14 Hb_002250_040 0.0866088432 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
15 Hb_018487_040 0.086916324 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
16 Hb_002301_070 0.0870240263 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_001097_110 0.0898784648 - - gibberellin 20-oxidase, putative [Ricinus communis]
18 Hb_046825_010 0.090005803 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
19 Hb_180094_010 0.0900664199 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
20 Hb_003528_100 0.092582973 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006718_030 Hb_006718_030 Hb_002329_050 Hb_002329_050 Hb_006718_030--Hb_002329_050 Hb_000883_080 Hb_000883_080 Hb_006718_030--Hb_000883_080 Hb_005483_040 Hb_005483_040 Hb_006718_030--Hb_005483_040 Hb_000268_050 Hb_000268_050 Hb_006718_030--Hb_000268_050 Hb_000363_070 Hb_000363_070 Hb_006718_030--Hb_000363_070 Hb_000140_040 Hb_000140_040 Hb_006718_030--Hb_000140_040 Hb_002329_050--Hb_000268_050 Hb_002329_050--Hb_000883_080 Hb_002329_050--Hb_005483_040 Hb_011362_010 Hb_011362_010 Hb_002329_050--Hb_011362_010 Hb_018487_040 Hb_018487_040 Hb_002329_050--Hb_018487_040 Hb_000928_260 Hb_000928_260 Hb_002329_050--Hb_000928_260 Hb_000883_080--Hb_000928_260 Hb_000883_080--Hb_011362_010 Hb_000883_080--Hb_005483_040 Hb_000883_080--Hb_018487_040 Hb_005483_040--Hb_018487_040 Hb_002250_040 Hb_002250_040 Hb_005483_040--Hb_002250_040 Hb_005483_040--Hb_011362_010 Hb_000268_050--Hb_011362_010 Hb_003528_100 Hb_003528_100 Hb_000268_050--Hb_003528_100 Hb_000160_120 Hb_000160_120 Hb_000268_050--Hb_000160_120 Hb_001437_170 Hb_001437_170 Hb_000268_050--Hb_001437_170 Hb_096907_010 Hb_096907_010 Hb_000268_050--Hb_096907_010 Hb_045260_010 Hb_045260_010 Hb_000363_070--Hb_045260_010 Hb_000540_080 Hb_000540_080 Hb_000363_070--Hb_000540_080 Hb_003647_070 Hb_003647_070 Hb_000363_070--Hb_003647_070 Hb_002010_040 Hb_002010_040 Hb_000363_070--Hb_002010_040 Hb_000363_070--Hb_000140_040 Hb_000007_290 Hb_000007_290 Hb_000363_070--Hb_000007_290 Hb_180094_010 Hb_180094_010 Hb_000140_040--Hb_180094_010 Hb_127349_020 Hb_127349_020 Hb_000140_040--Hb_127349_020 Hb_001097_110 Hb_001097_110 Hb_000140_040--Hb_001097_110 Hb_000152_300 Hb_000152_300 Hb_000140_040--Hb_000152_300 Hb_046825_010 Hb_046825_010 Hb_000140_040--Hb_046825_010 Hb_007534_080 Hb_007534_080 Hb_000140_040--Hb_007534_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0972352 0.0876842 2.15614 4.01656 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0320491 12.5801

CAGE analysis