Hb_000134_080

Information

Type -
Description -
Location Contig134: 44311-48088
Sequence    

Annotation

kegg
ID rcu:RCOM_1526790
description synaptotagmin, putative
nr
ID XP_002513191.1
description synaptotagmin, putative [Ricinus communis]
swissprot
ID B8XCH5
description Protein QUIRKY OS=Arabidopsis thaliana GN=QKY PE=2 SV=1
trembl
ID B9RHH2
description Synaptotagmin, putative OS=Ricinus communis GN=RCOM_1526790 PE=4 SV=1
Gene Ontology
ID GO:0016757
description c2 domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09590: 44623-45623 , PASA_asmbl_09591: 45769-46399 , PASA_asmbl_09592: 46894-47190
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000134_080 0.0 - - synaptotagmin, putative [Ricinus communis]
2 Hb_008226_010 0.0876354981 - - PREDICTED: uncharacterized protein LOC105649179 [Jatropha curcas]
3 Hb_000661_270 0.1059893183 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
4 Hb_001657_020 0.1081572392 - - heat shock family protein [Populus trichocarpa]
5 Hb_001488_160 0.1095481234 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
6 Hb_000139_060 0.1100340798 - - Photosystem I reaction center subunit II, chloroplast precursor, putative [Ricinus communis]
7 Hb_002338_040 0.1137781746 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000260_520 0.1140062197 - - receptor protein kinase, putative [Ricinus communis]
9 Hb_001541_200 0.1141877181 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
10 Hb_008727_060 0.1164848296 - - Beta-glucosidase, putative [Ricinus communis]
11 Hb_001699_110 0.1182512748 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
12 Hb_005066_040 0.121663229 - - Reticuline oxidase precursor, putative [Ricinus communis]
13 Hb_000920_100 0.122221552 - - o-methyltransferase, putative [Ricinus communis]
14 Hb_004837_080 0.1244614118 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
15 Hb_002119_150 0.1255907396 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
16 Hb_000254_080 0.1262285055 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
17 Hb_000230_490 0.1275748752 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000389_170 0.1278968466 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
19 Hb_020956_030 0.1287257523 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
20 Hb_005843_010 0.130142775 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000134_080 Hb_000134_080 Hb_008226_010 Hb_008226_010 Hb_000134_080--Hb_008226_010 Hb_000661_270 Hb_000661_270 Hb_000134_080--Hb_000661_270 Hb_001657_020 Hb_001657_020 Hb_000134_080--Hb_001657_020 Hb_001488_160 Hb_001488_160 Hb_000134_080--Hb_001488_160 Hb_000139_060 Hb_000139_060 Hb_000134_080--Hb_000139_060 Hb_002338_040 Hb_002338_040 Hb_000134_080--Hb_002338_040 Hb_008226_010--Hb_000139_060 Hb_015234_010 Hb_015234_010 Hb_008226_010--Hb_015234_010 Hb_008226_010--Hb_002338_040 Hb_000260_520 Hb_000260_520 Hb_008226_010--Hb_000260_520 Hb_005066_040 Hb_005066_040 Hb_008226_010--Hb_005066_040 Hb_005843_010 Hb_005843_010 Hb_000661_270--Hb_005843_010 Hb_001278_020 Hb_001278_020 Hb_000661_270--Hb_001278_020 Hb_001541_200 Hb_001541_200 Hb_000661_270--Hb_001541_200 Hb_000708_020 Hb_000708_020 Hb_000661_270--Hb_000708_020 Hb_000083_210 Hb_000083_210 Hb_000661_270--Hb_000083_210 Hb_001657_020--Hb_001541_200 Hb_001433_090 Hb_001433_090 Hb_001657_020--Hb_001433_090 Hb_020956_030 Hb_020956_030 Hb_001657_020--Hb_020956_030 Hb_005183_050 Hb_005183_050 Hb_001657_020--Hb_005183_050 Hb_003152_020 Hb_003152_020 Hb_001657_020--Hb_003152_020 Hb_026549_060 Hb_026549_060 Hb_001657_020--Hb_026549_060 Hb_005675_030 Hb_005675_030 Hb_001488_160--Hb_005675_030 Hb_001699_110 Hb_001699_110 Hb_001488_160--Hb_001699_110 Hb_018487_040 Hb_018487_040 Hb_001488_160--Hb_018487_040 Hb_011537_130 Hb_011537_130 Hb_001488_160--Hb_011537_130 Hb_080048_030 Hb_080048_030 Hb_001488_160--Hb_080048_030 Hb_000739_280 Hb_000739_280 Hb_001488_160--Hb_000739_280 Hb_000139_060--Hb_001541_200 Hb_001557_010 Hb_001557_010 Hb_000139_060--Hb_001557_010 Hb_000139_060--Hb_005066_040 Hb_000008_070 Hb_000008_070 Hb_000139_060--Hb_000008_070 Hb_000139_060--Hb_001657_020 Hb_033681_030 Hb_033681_030 Hb_002338_040--Hb_033681_030 Hb_002044_070 Hb_002044_070 Hb_002338_040--Hb_002044_070 Hb_005483_040 Hb_005483_040 Hb_002338_040--Hb_005483_040 Hb_086300_010 Hb_086300_010 Hb_002338_040--Hb_086300_010 Hb_002149_060 Hb_002149_060 Hb_002338_040--Hb_002149_060 Hb_002329_050 Hb_002329_050 Hb_002338_040--Hb_002329_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0954817 0.433903 0.936884 2.3407 0.066771 0.0229588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0142572 0 0.0214676 0.102338 5.29179

CAGE analysis