Hb_000661_270

Information

Type desease resistance
Description Gene Name: ABC_tran
Location Contig661: 300400-317968
Sequence    

Annotation

kegg
ID rcu:RCOM_1578670
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID AIU41649.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q8RWI9
description ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2
trembl
ID A0A097P9Q5
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCG15 PE=2 SV=1
Gene Ontology
ID GO:0009506
description abc transporter g family member 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53000: 300699-306736 , PASA_asmbl_53001: 300989-306542 , PASA_asmbl_53004: 301267-301648 , PASA_asmbl_53007: 315178-315774 , PASA_asmbl_53008: 317146-318031
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000661_270 0.0 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
2 Hb_005843_010 0.0834342759 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
3 Hb_001278_020 0.0998457672 - - sucrose synthase 6 [Hevea brasiliensis]
4 Hb_001541_200 0.1059763254 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
5 Hb_000134_080 0.1059893183 - - synaptotagmin, putative [Ricinus communis]
6 Hb_000708_020 0.1060036289 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
7 Hb_000083_210 0.1084849777 - - Major facilitator superfamily protein, putative [Theobroma cacao]
8 Hb_001657_020 0.1100733648 - - heat shock family protein [Populus trichocarpa]
9 Hb_005010_030 0.1101334939 - - PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]
10 Hb_005678_020 0.1120247454 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_026549_060 0.1125561417 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
12 Hb_000358_090 0.1134647787 - - zinc finger protein, putative [Ricinus communis]
13 Hb_005066_040 0.1134859574 - - Reticuline oxidase precursor, putative [Ricinus communis]
14 Hb_002246_030 0.1143811475 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
15 Hb_005914_160 0.1151367473 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
16 Hb_000958_090 0.1167209804 - - PREDICTED: cation/H(+) antiporter 28 [Jatropha curcas]
17 Hb_000462_010 0.1167826518 - - hypothetical protein VITISV_041696 [Vitis vinifera]
18 Hb_009315_010 0.1201529509 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
19 Hb_001047_210 0.1224289349 - - PSI reaction center subunit II [Citrus sinensis]
20 Hb_001699_110 0.1230088117 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_000661_270 Hb_000661_270 Hb_005843_010 Hb_005843_010 Hb_000661_270--Hb_005843_010 Hb_001278_020 Hb_001278_020 Hb_000661_270--Hb_001278_020 Hb_001541_200 Hb_001541_200 Hb_000661_270--Hb_001541_200 Hb_000134_080 Hb_000134_080 Hb_000661_270--Hb_000134_080 Hb_000708_020 Hb_000708_020 Hb_000661_270--Hb_000708_020 Hb_000083_210 Hb_000083_210 Hb_000661_270--Hb_000083_210 Hb_005678_020 Hb_005678_020 Hb_005843_010--Hb_005678_020 Hb_000462_010 Hb_000462_010 Hb_005843_010--Hb_000462_010 Hb_009315_010 Hb_009315_010 Hb_005843_010--Hb_009315_010 Hb_005010_030 Hb_005010_030 Hb_005843_010--Hb_005010_030 Hb_005843_010--Hb_000708_020 Hb_005066_040 Hb_005066_040 Hb_005843_010--Hb_005066_040 Hb_000008_070 Hb_000008_070 Hb_001278_020--Hb_000008_070 Hb_000358_090 Hb_000358_090 Hb_001278_020--Hb_000358_090 Hb_001278_020--Hb_001541_200 Hb_001657_020 Hb_001657_020 Hb_001278_020--Hb_001657_020 Hb_005295_020 Hb_005295_020 Hb_001278_020--Hb_005295_020 Hb_001541_200--Hb_001657_020 Hb_026549_060 Hb_026549_060 Hb_001541_200--Hb_026549_060 Hb_020956_030 Hb_020956_030 Hb_001541_200--Hb_020956_030 Hb_001433_090 Hb_001433_090 Hb_001541_200--Hb_001433_090 Hb_005183_050 Hb_005183_050 Hb_001541_200--Hb_005183_050 Hb_003162_060 Hb_003162_060 Hb_001541_200--Hb_003162_060 Hb_008226_010 Hb_008226_010 Hb_000134_080--Hb_008226_010 Hb_000134_080--Hb_001657_020 Hb_001488_160 Hb_001488_160 Hb_000134_080--Hb_001488_160 Hb_000139_060 Hb_000139_060 Hb_000134_080--Hb_000139_060 Hb_002338_040 Hb_002338_040 Hb_000134_080--Hb_002338_040 Hb_000708_020--Hb_005678_020 Hb_005914_160 Hb_005914_160 Hb_000708_020--Hb_005914_160 Hb_000389_170 Hb_000389_170 Hb_000708_020--Hb_000389_170 Hb_001699_110 Hb_001699_110 Hb_000708_020--Hb_001699_110 Hb_000708_020--Hb_000462_010 Hb_000749_300 Hb_000749_300 Hb_000083_210--Hb_000749_300 Hb_001500_130 Hb_001500_130 Hb_000083_210--Hb_001500_130 Hb_000083_210--Hb_005010_030 Hb_002246_030 Hb_002246_030 Hb_000083_210--Hb_002246_030 Hb_001047_210 Hb_001047_210 Hb_000083_210--Hb_001047_210 Hb_000083_210--Hb_001433_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.64521 7.99614 17.5442 34.5516 0.0907263 0.205369
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.38686 0.101484 0.0600315 0.503809 59.8874

CAGE analysis