Hb_000270_340

Information

Type -
Description -
Location Contig270: 251388-251801
Sequence    

Annotation

kegg
ID pop:POPTR_0015s08000g
description POPTRDRAFT_776013; hypothetical protein
nr
ID KDP31170.1
description hypothetical protein JCGZ_11546 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KFY9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11546 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28192: 251237-252187
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_340 0.0 - - hypothetical protein JCGZ_11546 [Jatropha curcas]
2 Hb_001097_030 0.0941735943 - - nuclear transport factor, putative [Ricinus communis]
3 Hb_001163_010 0.1128164737 - - PREDICTED: syncoilin [Jatropha curcas]
4 Hb_000427_020 0.1169234146 - - PsbA, partial [Dianthus pygmaeus]
5 Hb_000538_110 0.1174951273 - - sucrose synthase 1 [Hevea brasiliensis]
6 Hb_000076_240 0.1207248739 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
7 Hb_000122_230 0.1256570752 - - laccase, putative [Ricinus communis]
8 Hb_000029_210 0.1261607285 - - protein binding protein, putative [Ricinus communis]
9 Hb_010883_160 0.126227327 - - PREDICTED: pathogenesis-related protein 5 isoform X1 [Jatropha curcas]
10 Hb_000563_520 0.1318016675 - - multidrug resistance pump, putative [Ricinus communis]
11 Hb_001053_120 0.1350019883 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46-like [Populus euphratica]
12 Hb_012633_060 0.1363243747 - - laccase, putative [Ricinus communis]
13 Hb_008518_060 0.137103387 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
14 Hb_002119_150 0.1396478353 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
15 Hb_008705_080 0.1406711987 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
16 Hb_000139_060 0.1407340655 - - Photosystem I reaction center subunit II, chloroplast precursor, putative [Ricinus communis]
17 Hb_001688_050 0.1413333769 - - PREDICTED: reticulon-like protein B9 [Jatropha curcas]
18 Hb_001832_170 0.1426283314 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
19 Hb_015807_130 0.1427295525 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
20 Hb_151290_010 0.1430490149 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000270_340 Hb_000270_340 Hb_001097_030 Hb_001097_030 Hb_000270_340--Hb_001097_030 Hb_001163_010 Hb_001163_010 Hb_000270_340--Hb_001163_010 Hb_000427_020 Hb_000427_020 Hb_000270_340--Hb_000427_020 Hb_000538_110 Hb_000538_110 Hb_000270_340--Hb_000538_110 Hb_000076_240 Hb_000076_240 Hb_000270_340--Hb_000076_240 Hb_000122_230 Hb_000122_230 Hb_000270_340--Hb_000122_230 Hb_000029_210 Hb_000029_210 Hb_001097_030--Hb_000029_210 Hb_001097_030--Hb_000538_110 Hb_001097_030--Hb_001163_010 Hb_001053_120 Hb_001053_120 Hb_001097_030--Hb_001053_120 Hb_005062_100 Hb_005062_100 Hb_001097_030--Hb_005062_100 Hb_008518_060 Hb_008518_060 Hb_001097_030--Hb_008518_060 Hb_001163_010--Hb_001053_120 Hb_001163_010--Hb_000029_210 Hb_009158_040 Hb_009158_040 Hb_001163_010--Hb_009158_040 Hb_001163_010--Hb_008518_060 Hb_001163_010--Hb_000427_020 Hb_002170_030 Hb_002170_030 Hb_001163_010--Hb_002170_030 Hb_000427_020--Hb_001053_120 Hb_000427_020--Hb_009158_040 Hb_023342_010 Hb_023342_010 Hb_000427_020--Hb_023342_010 Hb_000427_020--Hb_000029_210 Hb_000023_100 Hb_000023_100 Hb_000427_020--Hb_000023_100 Hb_011214_080 Hb_011214_080 Hb_000538_110--Hb_011214_080 Hb_000538_110--Hb_005062_100 Hb_002119_150 Hb_002119_150 Hb_000538_110--Hb_002119_150 Hb_000538_110--Hb_000029_210 Hb_012760_120 Hb_012760_120 Hb_000538_110--Hb_012760_120 Hb_003549_100 Hb_003549_100 Hb_000076_240--Hb_003549_100 Hb_010883_160 Hb_010883_160 Hb_000076_240--Hb_010883_160 Hb_132880_010 Hb_132880_010 Hb_000076_240--Hb_132880_010 Hb_001397_020 Hb_001397_020 Hb_000076_240--Hb_001397_020 Hb_003152_020 Hb_003152_020 Hb_000076_240--Hb_003152_020 Hb_136408_040 Hb_136408_040 Hb_000076_240--Hb_136408_040 Hb_002245_060 Hb_002245_060 Hb_000122_230--Hb_002245_060 Hb_004837_080 Hb_004837_080 Hb_000122_230--Hb_004837_080 Hb_001408_200 Hb_001408_200 Hb_000122_230--Hb_001408_200 Hb_080797_010 Hb_080797_010 Hb_000122_230--Hb_080797_010 Hb_000254_080 Hb_000254_080 Hb_000122_230--Hb_000254_080 Hb_007620_020 Hb_007620_020 Hb_000122_230--Hb_007620_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.102592 0.137867 1.27712 7.1335 0.0798398 0.143393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.186704 0 0 0.374652 10.6874

CAGE analysis