Hb_032631_020

Information

Type -
Description -
Location Contig32631: 7619-8026
Sequence    

Annotation

kegg
ID pop:POPTR_0709s00210g
description glycine-rich family protein
nr
ID XP_006387664.1
description glycine-rich family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U7DYE4
description Glycine-rich family protein OS=Populus trichocarpa GN=POPTR_0709s00210g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34320: 7676-8230
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032631_020 0.0 - - glycine-rich family protein [Populus trichocarpa]
2 Hb_003849_070 0.1194275468 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
3 Hb_004242_170 0.1201470703 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
4 Hb_000056_110 0.1260543146 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
5 Hb_000350_030 0.1342537523 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00277 [Jatropha curcas]
6 Hb_001053_020 0.134258798 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
7 Hb_003207_030 0.1405115226 - - hypothetical protein VITISV_027754 [Vitis vinifera]
8 Hb_001252_030 0.141020912 - - Serine/threonine-protein kinase Nek8, putative [Ricinus communis]
9 Hb_001677_040 0.1412086601 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
10 Hb_000347_190 0.1457801239 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
11 Hb_000005_370 0.1459222807 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634024 [Jatropha curcas]
12 Hb_000976_130 0.1465521329 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
13 Hb_003929_240 0.1469720516 - - PREDICTED: uncharacterized protein LOC105643616 isoform X2 [Jatropha curcas]
14 Hb_012799_190 0.1478231397 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
15 Hb_000441_050 0.1534412411 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
16 Hb_105033_010 0.1538432577 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X2 [Jatropha curcas]
17 Hb_000208_270 0.1557190483 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
18 Hb_009692_040 0.1578402201 - - PREDICTED: peptide chain release factor PrfB3, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000103_230 0.1604759711 - - PREDICTED: chlorophyllase-2, chloroplastic [Jatropha curcas]
20 Hb_000333_030 0.1612793358 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_032631_020 Hb_032631_020 Hb_003849_070 Hb_003849_070 Hb_032631_020--Hb_003849_070 Hb_004242_170 Hb_004242_170 Hb_032631_020--Hb_004242_170 Hb_000056_110 Hb_000056_110 Hb_032631_020--Hb_000056_110 Hb_000350_030 Hb_000350_030 Hb_032631_020--Hb_000350_030 Hb_001053_020 Hb_001053_020 Hb_032631_020--Hb_001053_020 Hb_003207_030 Hb_003207_030 Hb_032631_020--Hb_003207_030 Hb_016924_010 Hb_016924_010 Hb_003849_070--Hb_016924_010 Hb_000005_370 Hb_000005_370 Hb_003849_070--Hb_000005_370 Hb_001252_030 Hb_001252_030 Hb_003849_070--Hb_001252_030 Hb_001999_070 Hb_001999_070 Hb_003849_070--Hb_001999_070 Hb_020141_030 Hb_020141_030 Hb_003849_070--Hb_020141_030 Hb_000441_050 Hb_000441_050 Hb_004242_170--Hb_000441_050 Hb_004242_170--Hb_001053_020 Hb_000108_150 Hb_000108_150 Hb_004242_170--Hb_000108_150 Hb_005977_060 Hb_005977_060 Hb_004242_170--Hb_005977_060 Hb_001348_090 Hb_001348_090 Hb_004242_170--Hb_001348_090 Hb_009692_040 Hb_009692_040 Hb_004242_170--Hb_009692_040 Hb_034507_050 Hb_034507_050 Hb_000056_110--Hb_034507_050 Hb_000787_210 Hb_000787_210 Hb_000056_110--Hb_000787_210 Hb_010174_100 Hb_010174_100 Hb_000056_110--Hb_010174_100 Hb_000056_110--Hb_001252_030 Hb_000056_110--Hb_020141_030 Hb_001677_040 Hb_001677_040 Hb_000056_110--Hb_001677_040 Hb_000347_190 Hb_000347_190 Hb_000350_030--Hb_000347_190 Hb_000350_030--Hb_001677_040 Hb_181838_010 Hb_181838_010 Hb_000350_030--Hb_181838_010 Hb_000350_030--Hb_000056_110 Hb_105033_010 Hb_105033_010 Hb_000350_030--Hb_105033_010 Hb_000042_050 Hb_000042_050 Hb_001053_020--Hb_000042_050 Hb_001053_020--Hb_000441_050 Hb_000976_130 Hb_000976_130 Hb_001053_020--Hb_000976_130 Hb_001053_020--Hb_001252_030 Hb_001053_020--Hb_009692_040 Hb_003207_030--Hb_000976_130 Hb_012799_190 Hb_012799_190 Hb_003207_030--Hb_012799_190 Hb_002085_080 Hb_002085_080 Hb_003207_030--Hb_002085_080 Hb_008616_040 Hb_008616_040 Hb_003207_030--Hb_008616_040 Hb_000665_270 Hb_000665_270 Hb_003207_030--Hb_000665_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.527582 2.11057 4.51829 7.75618 1.18553 0.589741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.383798 0.753643 0 1.866 12.0001

CAGE analysis