Hb_003207_030

Information

Type -
Description -
Location Contig3207: 16847-26454
Sequence    

Annotation

kegg
ID mtr:MTR_8g027260
description Subtilisin-like serine protease
nr
ID CAN62173.1
description hypothetical protein VITISV_027754 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5C7U1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027754 PE=4 SV=1
Gene Ontology
ID GO:0008233
description cucumisin-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003207_030 0.0 - - hypothetical protein VITISV_027754 [Vitis vinifera]
2 Hb_000976_130 0.117138114 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
3 Hb_012799_190 0.1178465943 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
4 Hb_002085_080 0.1341334349 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 68-like [Jatropha curcas]
5 Hb_032631_020 0.1405115226 - - glycine-rich family protein [Populus trichocarpa]
6 Hb_008616_040 0.1431457198 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
7 Hb_000665_270 0.1451949927 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
8 Hb_105033_010 0.151617283 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X2 [Jatropha curcas]
9 Hb_001250_020 0.1531693983 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
10 Hb_001053_020 0.1545332192 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
11 Hb_000005_100 0.1573311002 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
12 Hb_006916_030 0.1574885725 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
13 Hb_004242_170 0.1586629105 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
14 Hb_000376_210 0.1586862628 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
15 Hb_000538_300 0.1609110513 - - PREDICTED: WAT1-related protein At3g02690, chloroplastic [Jatropha curcas]
16 Hb_006132_010 0.1659157041 - - -
17 Hb_000042_050 0.1692982526 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
18 Hb_006916_050 0.1695308983 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
19 Hb_000487_370 0.1696695447 - - -
20 Hb_000762_110 0.1697809196 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003207_030 Hb_003207_030 Hb_000976_130 Hb_000976_130 Hb_003207_030--Hb_000976_130 Hb_012799_190 Hb_012799_190 Hb_003207_030--Hb_012799_190 Hb_002085_080 Hb_002085_080 Hb_003207_030--Hb_002085_080 Hb_032631_020 Hb_032631_020 Hb_003207_030--Hb_032631_020 Hb_008616_040 Hb_008616_040 Hb_003207_030--Hb_008616_040 Hb_000665_270 Hb_000665_270 Hb_003207_030--Hb_000665_270 Hb_000976_130--Hb_008616_040 Hb_001053_020 Hb_001053_020 Hb_000976_130--Hb_001053_020 Hb_000005_100 Hb_000005_100 Hb_000976_130--Hb_000005_100 Hb_001250_020 Hb_001250_020 Hb_000976_130--Hb_001250_020 Hb_004242_170 Hb_004242_170 Hb_000976_130--Hb_004242_170 Hb_000976_130--Hb_012799_190 Hb_012799_190--Hb_004242_170 Hb_000834_080 Hb_000834_080 Hb_012799_190--Hb_000834_080 Hb_012799_190--Hb_001053_020 Hb_000336_200 Hb_000336_200 Hb_012799_190--Hb_000336_200 Hb_000762_110 Hb_000762_110 Hb_012799_190--Hb_000762_110 Hb_126917_010 Hb_126917_010 Hb_002085_080--Hb_126917_010 Hb_003171_030 Hb_003171_030 Hb_002085_080--Hb_003171_030 Hb_002783_150 Hb_002783_150 Hb_002085_080--Hb_002783_150 Hb_000264_280 Hb_000264_280 Hb_002085_080--Hb_000264_280 Hb_002085_080--Hb_000976_130 Hb_003849_070 Hb_003849_070 Hb_032631_020--Hb_003849_070 Hb_032631_020--Hb_004242_170 Hb_000056_110 Hb_000056_110 Hb_032631_020--Hb_000056_110 Hb_000350_030 Hb_000350_030 Hb_032631_020--Hb_000350_030 Hb_032631_020--Hb_001053_020 Hb_018043_020 Hb_018043_020 Hb_008616_040--Hb_018043_020 Hb_008616_040--Hb_001250_020 Hb_003029_140 Hb_003029_140 Hb_008616_040--Hb_003029_140 Hb_021409_190 Hb_021409_190 Hb_008616_040--Hb_021409_190 Hb_010984_010 Hb_010984_010 Hb_008616_040--Hb_010984_010 Hb_000465_440 Hb_000465_440 Hb_000665_270--Hb_000465_440 Hb_001649_030 Hb_001649_030 Hb_000665_270--Hb_001649_030 Hb_000665_270--Hb_000336_200 Hb_001269_500 Hb_001269_500 Hb_000665_270--Hb_001269_500 Hb_000358_040 Hb_000358_040 Hb_000665_270--Hb_000358_040 Hb_009288_040 Hb_009288_040 Hb_000665_270--Hb_009288_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0194216 0.0833708 0.0944397 0.123398 0.0376296 0.0271332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0220665 0.0347255 0 0.041438 0.257008

CAGE analysis