Hb_002085_080

Information

Type transcription factor
Description TF Family: NAC
Location Contig2085: 150256-152008
Sequence    

Annotation

kegg
ID rcu:RCOM_1401150
description NAC domain-containing protein, putative
nr
ID XP_012065118.1
description PREDICTED: NAC domain-containing protein 68-like [Jatropha curcas]
swissprot
ID O49255
description NAC transcription factor 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1
trembl
ID R4NFT4
description NAC transcription factor 023 OS=Jatropha curcas PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002085_080 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 68-like [Jatropha curcas]
2 Hb_003207_030 0.1341334349 - - hypothetical protein VITISV_027754 [Vitis vinifera]
3 Hb_126917_010 0.1472180232 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
4 Hb_003171_030 0.1635294819 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
5 Hb_002783_150 0.1676610339 - - cyclophilin [Hevea brasiliensis]
6 Hb_000264_280 0.1695211802 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
7 Hb_000976_130 0.1700781101 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
8 Hb_006420_010 0.1711543207 - - PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
9 Hb_000665_270 0.1729914581 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
10 Hb_001343_020 0.174161789 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_001649_030 0.1750148471 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
12 Hb_000005_100 0.1767048323 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
13 Hb_004357_060 0.1769131942 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
14 Hb_000834_080 0.17873497 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
15 Hb_012799_190 0.179594981 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
16 Hb_004223_270 0.1815164621 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
17 Hb_001269_500 0.1829404546 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
18 Hb_004502_010 0.1837267876 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
19 Hb_009687_020 0.1855079206 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
20 Hb_005116_100 0.1867337692 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]

Gene co-expression network

sample Hb_002085_080 Hb_002085_080 Hb_003207_030 Hb_003207_030 Hb_002085_080--Hb_003207_030 Hb_126917_010 Hb_126917_010 Hb_002085_080--Hb_126917_010 Hb_003171_030 Hb_003171_030 Hb_002085_080--Hb_003171_030 Hb_002783_150 Hb_002783_150 Hb_002085_080--Hb_002783_150 Hb_000264_280 Hb_000264_280 Hb_002085_080--Hb_000264_280 Hb_000976_130 Hb_000976_130 Hb_002085_080--Hb_000976_130 Hb_003207_030--Hb_000976_130 Hb_012799_190 Hb_012799_190 Hb_003207_030--Hb_012799_190 Hb_032631_020 Hb_032631_020 Hb_003207_030--Hb_032631_020 Hb_008616_040 Hb_008616_040 Hb_003207_030--Hb_008616_040 Hb_000665_270 Hb_000665_270 Hb_003207_030--Hb_000665_270 Hb_000834_080 Hb_000834_080 Hb_126917_010--Hb_000834_080 Hb_009687_020 Hb_009687_020 Hb_126917_010--Hb_009687_020 Hb_000300_020 Hb_000300_020 Hb_126917_010--Hb_000300_020 Hb_126917_010--Hb_003171_030 Hb_011053_030 Hb_011053_030 Hb_126917_010--Hb_011053_030 Hb_001269_500 Hb_001269_500 Hb_126917_010--Hb_001269_500 Hb_003171_030--Hb_009687_020 Hb_006198_130 Hb_006198_130 Hb_003171_030--Hb_006198_130 Hb_000059_270 Hb_000059_270 Hb_003171_030--Hb_000059_270 Hb_000816_200 Hb_000816_200 Hb_003171_030--Hb_000816_200 Hb_001723_030 Hb_001723_030 Hb_003171_030--Hb_001723_030 Hb_003171_030--Hb_001269_500 Hb_007904_040 Hb_007904_040 Hb_002783_150--Hb_007904_040 Hb_009615_180 Hb_009615_180 Hb_002783_150--Hb_009615_180 Hb_000032_400 Hb_000032_400 Hb_002783_150--Hb_000032_400 Hb_000500_050 Hb_000500_050 Hb_002783_150--Hb_000500_050 Hb_004672_020 Hb_004672_020 Hb_002783_150--Hb_004672_020 Hb_003664_030 Hb_003664_030 Hb_000264_280--Hb_003664_030 Hb_000108_150 Hb_000108_150 Hb_000264_280--Hb_000108_150 Hb_000061_250 Hb_000061_250 Hb_000264_280--Hb_000061_250 Hb_000264_280--Hb_001269_500 Hb_003948_020 Hb_003948_020 Hb_000264_280--Hb_003948_020 Hb_001649_030 Hb_001649_030 Hb_000264_280--Hb_001649_030 Hb_000976_130--Hb_008616_040 Hb_001053_020 Hb_001053_020 Hb_000976_130--Hb_001053_020 Hb_000005_100 Hb_000005_100 Hb_000976_130--Hb_000005_100 Hb_001250_020 Hb_001250_020 Hb_000976_130--Hb_001250_020 Hb_004242_170 Hb_004242_170 Hb_000976_130--Hb_004242_170 Hb_000976_130--Hb_012799_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0244102 0.120472 0.257614 0.205597 0.0745879 0.0344052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.044717 0.175865 0 0.0846738 0.579571

CAGE analysis