Hb_000350_030

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig350: 21250-23603
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID KDP42480.1
description hypothetical protein JCGZ_00277 [Jatropha curcas]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A067LDA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00277 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000350_030 0.0 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00277 [Jatropha curcas]
2 Hb_000347_190 0.1231535921 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
3 Hb_001677_040 0.1311712258 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
4 Hb_181838_010 0.1332736829 - - PREDICTED: uncharacterized protein LOC105631275 [Jatropha curcas]
5 Hb_032631_020 0.1342537523 - - glycine-rich family protein [Populus trichocarpa]
6 Hb_000056_110 0.1376840986 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
7 Hb_105033_010 0.148502403 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X2 [Jatropha curcas]
8 Hb_028396_020 0.1505865922 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
9 Hb_001163_020 0.1539598017 desease resistance Gene Name: ABC_trans_N ATP-binding cassette transporter, putative [Ricinus communis]
10 Hb_000271_220 0.1555773064 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
11 Hb_004242_170 0.1589978966 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
12 Hb_000083_080 0.1594568988 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
13 Hb_001053_020 0.1612474439 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
14 Hb_012799_190 0.1616737188 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
15 Hb_002811_050 0.1634697487 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
16 Hb_006750_010 0.1643243261 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
17 Hb_003006_090 0.165428346 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
18 Hb_002675_080 0.1680577317 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]
19 Hb_000042_050 0.1700436526 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
20 Hb_000333_030 0.1720703497 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000350_030 Hb_000350_030 Hb_000347_190 Hb_000347_190 Hb_000350_030--Hb_000347_190 Hb_001677_040 Hb_001677_040 Hb_000350_030--Hb_001677_040 Hb_181838_010 Hb_181838_010 Hb_000350_030--Hb_181838_010 Hb_032631_020 Hb_032631_020 Hb_000350_030--Hb_032631_020 Hb_000056_110 Hb_000056_110 Hb_000350_030--Hb_000056_110 Hb_105033_010 Hb_105033_010 Hb_000350_030--Hb_105033_010 Hb_001493_060 Hb_001493_060 Hb_000347_190--Hb_001493_060 Hb_004242_170 Hb_004242_170 Hb_000347_190--Hb_004242_170 Hb_003006_090 Hb_003006_090 Hb_000347_190--Hb_003006_090 Hb_000347_190--Hb_001677_040 Hb_035834_010 Hb_035834_010 Hb_000347_190--Hb_035834_010 Hb_001195_660 Hb_001195_660 Hb_001677_040--Hb_001195_660 Hb_000417_050 Hb_000417_050 Hb_001677_040--Hb_000417_050 Hb_000333_030 Hb_000333_030 Hb_001677_040--Hb_000333_030 Hb_002662_110 Hb_002662_110 Hb_001677_040--Hb_002662_110 Hb_002675_080 Hb_002675_080 Hb_001677_040--Hb_002675_080 Hb_001053_020 Hb_001053_020 Hb_001677_040--Hb_001053_020 Hb_001163_020 Hb_001163_020 Hb_181838_010--Hb_001163_020 Hb_001348_090 Hb_001348_090 Hb_181838_010--Hb_001348_090 Hb_001221_200 Hb_001221_200 Hb_181838_010--Hb_001221_200 Hb_181838_010--Hb_004242_170 Hb_001793_050 Hb_001793_050 Hb_181838_010--Hb_001793_050 Hb_003849_070 Hb_003849_070 Hb_032631_020--Hb_003849_070 Hb_032631_020--Hb_004242_170 Hb_032631_020--Hb_000056_110 Hb_032631_020--Hb_001053_020 Hb_003207_030 Hb_003207_030 Hb_032631_020--Hb_003207_030 Hb_034507_050 Hb_034507_050 Hb_000056_110--Hb_034507_050 Hb_000787_210 Hb_000787_210 Hb_000056_110--Hb_000787_210 Hb_010174_100 Hb_010174_100 Hb_000056_110--Hb_010174_100 Hb_001252_030 Hb_001252_030 Hb_000056_110--Hb_001252_030 Hb_020141_030 Hb_020141_030 Hb_000056_110--Hb_020141_030 Hb_000056_110--Hb_001677_040 Hb_005532_020 Hb_005532_020 Hb_105033_010--Hb_005532_020 Hb_105033_010--Hb_002675_080 Hb_000271_220 Hb_000271_220 Hb_105033_010--Hb_000271_220 Hb_000422_080 Hb_000422_080 Hb_105033_010--Hb_000422_080 Hb_000042_050 Hb_000042_050 Hb_105033_010--Hb_000042_050 Hb_014361_090 Hb_014361_090 Hb_105033_010--Hb_014361_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0148234 0.0928039 0.20049 0.348272 0.0231346 0.0821152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0271636 0.0213716 0 0.0511049 0.404309

CAGE analysis