Hb_005532_020

Information

Type -
Description -
Location Contig5532: 12035-12448
Sequence    

Annotation

kegg
ID vvi:100262861
description uncharacterized LOC100262861
nr
ID XP_002271911.1
description PREDICTED: uncharacterized protein LOC100262861 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BTC8
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005532_020 0.0 - - PREDICTED: uncharacterized protein LOC100262861 [Vitis vinifera]
2 Hb_002552_010 0.1208698338 transcription factor TF Family: DBP protein phosphatase 2c, putative [Ricinus communis]
3 Hb_002110_170 0.1215681311 - - hypothetical protein CICLE_v10002406mg [Citrus clementina]
4 Hb_105033_010 0.1281669586 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X2 [Jatropha curcas]
5 Hb_001059_060 0.1354351972 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
6 Hb_003849_120 0.1370750433 - - PREDICTED: uncharacterized protein LOC100264440 [Vitis vinifera]
7 Hb_009078_020 0.1409673293 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
8 Hb_000853_330 0.1410418652 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
9 Hb_003849_160 0.1435456354 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
10 Hb_001999_320 0.1469283464 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
11 Hb_002675_080 0.1470455385 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]
12 Hb_002026_030 0.1471450438 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
13 Hb_000622_330 0.1481383916 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
14 Hb_000042_050 0.1506072802 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
15 Hb_000594_060 0.1518082438 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
16 Hb_010315_100 0.1527202926 - - PREDICTED: uncharacterized protein LOC104420162 [Eucalyptus grandis]
17 Hb_002217_080 0.1529952904 - - PREDICTED: probable beta-1,3-galactosyltransferase 16 [Jatropha curcas]
18 Hb_003912_080 0.1566491488 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
19 Hb_002909_100 0.1579285199 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
20 Hb_004052_110 0.1580680986 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005532_020 Hb_005532_020 Hb_002552_010 Hb_002552_010 Hb_005532_020--Hb_002552_010 Hb_002110_170 Hb_002110_170 Hb_005532_020--Hb_002110_170 Hb_105033_010 Hb_105033_010 Hb_005532_020--Hb_105033_010 Hb_001059_060 Hb_001059_060 Hb_005532_020--Hb_001059_060 Hb_003849_120 Hb_003849_120 Hb_005532_020--Hb_003849_120 Hb_009078_020 Hb_009078_020 Hb_005532_020--Hb_009078_020 Hb_002552_010--Hb_002110_170 Hb_001104_150 Hb_001104_150 Hb_002552_010--Hb_001104_150 Hb_003055_070 Hb_003055_070 Hb_002552_010--Hb_003055_070 Hb_093077_010 Hb_093077_010 Hb_002552_010--Hb_093077_010 Hb_010868_040 Hb_010868_040 Hb_002552_010--Hb_010868_040 Hb_000622_330 Hb_000622_330 Hb_002110_170--Hb_000622_330 Hb_005245_140 Hb_005245_140 Hb_002110_170--Hb_005245_140 Hb_002740_100 Hb_002740_100 Hb_002110_170--Hb_002740_100 Hb_005724_040 Hb_005724_040 Hb_002110_170--Hb_005724_040 Hb_002675_080 Hb_002675_080 Hb_105033_010--Hb_002675_080 Hb_000271_220 Hb_000271_220 Hb_105033_010--Hb_000271_220 Hb_000422_080 Hb_000422_080 Hb_105033_010--Hb_000422_080 Hb_000042_050 Hb_000042_050 Hb_105033_010--Hb_000042_050 Hb_014361_090 Hb_014361_090 Hb_105033_010--Hb_014361_090 Hb_001059_060--Hb_009078_020 Hb_000853_330 Hb_000853_330 Hb_001059_060--Hb_000853_330 Hb_004052_110 Hb_004052_110 Hb_001059_060--Hb_004052_110 Hb_011188_010 Hb_011188_010 Hb_001059_060--Hb_011188_010 Hb_001998_210 Hb_001998_210 Hb_001059_060--Hb_001998_210 Hb_001439_070 Hb_001439_070 Hb_001059_060--Hb_001439_070 Hb_000012_400 Hb_000012_400 Hb_003849_120--Hb_000012_400 Hb_000562_100 Hb_000562_100 Hb_003849_120--Hb_000562_100 Hb_000997_070 Hb_000997_070 Hb_003849_120--Hb_000997_070 Hb_002217_080 Hb_002217_080 Hb_003849_120--Hb_002217_080 Hb_000968_060 Hb_000968_060 Hb_003849_120--Hb_000968_060 Hb_003849_120--Hb_009078_020 Hb_009078_020--Hb_011188_010 Hb_009078_020--Hb_001998_210 Hb_002809_160 Hb_002809_160 Hb_009078_020--Hb_002809_160 Hb_001408_020 Hb_001408_020 Hb_009078_020--Hb_001408_020 Hb_009078_020--Hb_000853_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.1972 251.341 343.086 367.2 107.321 46.4004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.4511 34.7554 3.08301 113.145 352.686

CAGE analysis