Hb_002552_010

Information

Type transcription factor
Description TF Family: DBP
Location Contig2552: 28356-32719
Sequence    

Annotation

kegg
ID rcu:RCOM_0510070
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002532504.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID Q5SMK6
description Probable protein phosphatase 2C 54 OS=Oryza sativa subsp. japonica GN=Os06g0179700 PE=2 SV=1
trembl
ID B9T2N5
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0510070 PE=3 SV=1
Gene Ontology
ID GO:0004721
description probable protein phosphatase 2c 27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26619: 28605-32632
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002552_010 0.0 transcription factor TF Family: DBP protein phosphatase 2c, putative [Ricinus communis]
2 Hb_002110_170 0.11293405 - - hypothetical protein CICLE_v10002406mg [Citrus clementina]
3 Hb_005532_020 0.1208698338 - - PREDICTED: uncharacterized protein LOC100262861 [Vitis vinifera]
4 Hb_001104_150 0.1468087412 - - PREDICTED: protein ROS1 [Jatropha curcas]
5 Hb_003055_070 0.1476680001 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
6 Hb_093077_010 0.1504971447 transcription factor TF Family: G2-like PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
7 Hb_010868_040 0.1540346994 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
8 Hb_001775_120 0.1547313871 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
9 Hb_000635_050 0.1557894967 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
10 Hb_000181_330 0.1567611995 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
11 Hb_002397_050 0.1585963435 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
12 Hb_004855_020 0.160360433 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
13 Hb_002311_280 0.1617309897 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
14 Hb_001677_040 0.1619666005 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
15 Hb_000243_060 0.1628954982 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
16 Hb_000465_020 0.1629683165 - - PREDICTED: uncharacterized protein LOC105632280 [Jatropha curcas]
17 Hb_000327_200 0.1648996253 - - glutathione-s-transferase omega, putative [Ricinus communis]
18 Hb_000922_160 0.1653157292 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis]
19 Hb_001141_350 0.1672066826 - - hypothetical protein JCGZ_02174 [Jatropha curcas]
20 Hb_003175_070 0.1686239055 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]

Gene co-expression network

sample Hb_002552_010 Hb_002552_010 Hb_002110_170 Hb_002110_170 Hb_002552_010--Hb_002110_170 Hb_005532_020 Hb_005532_020 Hb_002552_010--Hb_005532_020 Hb_001104_150 Hb_001104_150 Hb_002552_010--Hb_001104_150 Hb_003055_070 Hb_003055_070 Hb_002552_010--Hb_003055_070 Hb_093077_010 Hb_093077_010 Hb_002552_010--Hb_093077_010 Hb_010868_040 Hb_010868_040 Hb_002552_010--Hb_010868_040 Hb_002110_170--Hb_005532_020 Hb_000622_330 Hb_000622_330 Hb_002110_170--Hb_000622_330 Hb_005245_140 Hb_005245_140 Hb_002110_170--Hb_005245_140 Hb_002740_100 Hb_002740_100 Hb_002110_170--Hb_002740_100 Hb_005724_040 Hb_005724_040 Hb_002110_170--Hb_005724_040 Hb_105033_010 Hb_105033_010 Hb_005532_020--Hb_105033_010 Hb_001059_060 Hb_001059_060 Hb_005532_020--Hb_001059_060 Hb_003849_120 Hb_003849_120 Hb_005532_020--Hb_003849_120 Hb_009078_020 Hb_009078_020 Hb_005532_020--Hb_009078_020 Hb_000207_350 Hb_000207_350 Hb_001104_150--Hb_000207_350 Hb_001775_120 Hb_001775_120 Hb_001104_150--Hb_001775_120 Hb_005568_020 Hb_005568_020 Hb_001104_150--Hb_005568_020 Hb_005730_110 Hb_005730_110 Hb_001104_150--Hb_005730_110 Hb_022092_110 Hb_022092_110 Hb_001104_150--Hb_022092_110 Hb_004218_200 Hb_004218_200 Hb_001104_150--Hb_004218_200 Hb_000940_030 Hb_000940_030 Hb_003055_070--Hb_000940_030 Hb_007765_130 Hb_007765_130 Hb_003055_070--Hb_007765_130 Hb_000446_040 Hb_000446_040 Hb_003055_070--Hb_000446_040 Hb_000005_100 Hb_000005_100 Hb_003055_070--Hb_000005_100 Hb_000093_140 Hb_000093_140 Hb_003055_070--Hb_000093_140 Hb_004223_270 Hb_004223_270 Hb_003055_070--Hb_004223_270 Hb_000922_160 Hb_000922_160 Hb_093077_010--Hb_000922_160 Hb_003416_020 Hb_003416_020 Hb_093077_010--Hb_003416_020 Hb_006478_050 Hb_006478_050 Hb_093077_010--Hb_006478_050 Hb_000891_010 Hb_000891_010 Hb_093077_010--Hb_000891_010 Hb_000917_200 Hb_000917_200 Hb_093077_010--Hb_000917_200 Hb_093077_010--Hb_001775_120 Hb_004855_020 Hb_004855_020 Hb_010868_040--Hb_004855_020 Hb_000227_400 Hb_000227_400 Hb_010868_040--Hb_000227_400 Hb_010868_040--Hb_000940_030 Hb_010868_040--Hb_000207_350 Hb_000243_060 Hb_000243_060 Hb_010868_040--Hb_000243_060 Hb_010381_040 Hb_010381_040 Hb_010868_040--Hb_010381_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.123185 11.0094 24.2368 19.586 3.68387 0.777268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.15877 1.34942 0.218946 6.83074 19.2143

CAGE analysis