Hb_105033_010

Information

Type -
Description -
Location Contig105033: 12605-17933
Sequence    

Annotation

kegg
ID pop:POPTR_0014s15200g
description POPTRDRAFT_732233; galactosyltransferase family protein
nr
ID XP_012089863.1
description PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X2 [Jatropha curcas]
swissprot
ID A8MRC7
description Probable beta-1,3-galactosyltransferase 2 OS=Arabidopsis thaliana GN=B3GALT2 PE=2 SV=1
trembl
ID U5FT06
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s15200g PE=4 SV=1
Gene Ontology
ID GO:0005794
description probable beta- -galactosyltransferase 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01713: 12612-17598 , PASA_asmbl_01714: 17610-17803 , PASA_asmbl_01715: 17827-17927
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105033_010 0.0 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X2 [Jatropha curcas]
2 Hb_005532_020 0.1281669586 - - PREDICTED: uncharacterized protein LOC100262861 [Vitis vinifera]
3 Hb_002675_080 0.1295210126 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]
4 Hb_000271_220 0.1363397117 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
5 Hb_000422_080 0.1388957302 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
6 Hb_000042_050 0.1396801212 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
7 Hb_014361_090 0.141856107 - - acyl-CoA binding protein 3A [Vernicia fordii]
8 Hb_000959_300 0.1429973342 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
9 Hb_172632_130 0.1438002139 - - hypothetical protein JCGZ_22584 [Jatropha curcas]
10 Hb_006120_060 0.1439411795 - - O-acetyltransferase family protein isoform 1 [Theobroma cacao]
11 Hb_002488_010 0.1470313815 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
12 Hb_116702_010 0.1471271741 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
13 Hb_000350_030 0.148502403 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00277 [Jatropha curcas]
14 Hb_012799_190 0.1489982567 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
15 Hb_012807_150 0.1499331112 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
16 Hb_001999_320 0.1503914827 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
17 Hb_001677_040 0.1504401441 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
18 Hb_003207_030 0.151617283 - - hypothetical protein VITISV_027754 [Vitis vinifera]
19 Hb_011828_010 0.1522967764 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
20 Hb_003849_160 0.1523653651 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]

Gene co-expression network

sample Hb_105033_010 Hb_105033_010 Hb_005532_020 Hb_005532_020 Hb_105033_010--Hb_005532_020 Hb_002675_080 Hb_002675_080 Hb_105033_010--Hb_002675_080 Hb_000271_220 Hb_000271_220 Hb_105033_010--Hb_000271_220 Hb_000422_080 Hb_000422_080 Hb_105033_010--Hb_000422_080 Hb_000042_050 Hb_000042_050 Hb_105033_010--Hb_000042_050 Hb_014361_090 Hb_014361_090 Hb_105033_010--Hb_014361_090 Hb_002552_010 Hb_002552_010 Hb_005532_020--Hb_002552_010 Hb_002110_170 Hb_002110_170 Hb_005532_020--Hb_002110_170 Hb_001059_060 Hb_001059_060 Hb_005532_020--Hb_001059_060 Hb_003849_120 Hb_003849_120 Hb_005532_020--Hb_003849_120 Hb_009078_020 Hb_009078_020 Hb_005532_020--Hb_009078_020 Hb_002675_080--Hb_000042_050 Hb_000099_170 Hb_000099_170 Hb_002675_080--Hb_000099_170 Hb_003849_160 Hb_003849_160 Hb_002675_080--Hb_003849_160 Hb_003582_090 Hb_003582_090 Hb_002675_080--Hb_003582_090 Hb_003175_070 Hb_003175_070 Hb_002675_080--Hb_003175_070 Hb_002026_030 Hb_002026_030 Hb_002675_080--Hb_002026_030 Hb_000603_020 Hb_000603_020 Hb_000271_220--Hb_000603_020 Hb_012807_150 Hb_012807_150 Hb_000271_220--Hb_012807_150 Hb_000283_140 Hb_000283_140 Hb_000271_220--Hb_000283_140 Hb_000349_200 Hb_000349_200 Hb_000271_220--Hb_000349_200 Hb_003006_090 Hb_003006_090 Hb_000271_220--Hb_003006_090 Hb_003001_130 Hb_003001_130 Hb_000271_220--Hb_003001_130 Hb_004943_040 Hb_004943_040 Hb_000422_080--Hb_004943_040 Hb_000414_080 Hb_000414_080 Hb_000422_080--Hb_000414_080 Hb_000487_370 Hb_000487_370 Hb_000422_080--Hb_000487_370 Hb_000342_170 Hb_000342_170 Hb_000422_080--Hb_000342_170 Hb_000422_080--Hb_000283_140 Hb_002249_080 Hb_002249_080 Hb_000422_080--Hb_002249_080 Hb_001053_020 Hb_001053_020 Hb_000042_050--Hb_001053_020 Hb_007765_130 Hb_007765_130 Hb_000042_050--Hb_007765_130 Hb_000042_050--Hb_000099_170 Hb_000042_050--Hb_003175_070 Hb_000042_050--Hb_003849_160 Hb_030565_050 Hb_030565_050 Hb_014361_090--Hb_030565_050 Hb_011828_010 Hb_011828_010 Hb_014361_090--Hb_011828_010 Hb_002559_030 Hb_002559_030 Hb_014361_090--Hb_002559_030 Hb_005941_030 Hb_005941_030 Hb_014361_090--Hb_005941_030 Hb_000071_160 Hb_000071_160 Hb_014361_090--Hb_000071_160 Hb_004899_340 Hb_004899_340 Hb_014361_090--Hb_004899_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.76806 11.1794 18.7319 30.4894 5.60627 3.74039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.86453 2.1462 0.210647 5.52678 28.7176

CAGE analysis