Hb_000917_200

Information

Type -
Description -
Location Contig917: 215966-217416
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa010555mg
description hypothetical protein
nr
ID XP_007223757.1
description hypothetical protein PRUPE_ppa010555mg [Prunus persica]
swissprot
ID Q9C540
description Probable transmembrane ascorbate ferrireductase 4 OS=Arabidopsis thaliana GN=CYB561D PE=2 SV=1
trembl
ID M5XHI3
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010555mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable transmembrane ascorbate ferrireductase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000917_200 0.0 - - hypothetical protein PRUPE_ppa010555mg [Prunus persica]
2 Hb_006478_050 0.1160246511 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
3 Hb_000062_050 0.1210349394 - - protein binding protein, putative [Ricinus communis]
4 Hb_093077_010 0.1222141003 transcription factor TF Family: G2-like PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
5 Hb_016687_010 0.123828544 - - PREDICTED: uncharacterized protein LOC105637401 [Jatropha curcas]
6 Hb_000891_010 0.1267215123 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008878_020 0.1274444661 - - PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]
8 Hb_000922_160 0.1300590532 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis]
9 Hb_000037_200 0.1335527536 - - RNA binding protein, putative [Ricinus communis]
10 Hb_000926_070 0.1337726293 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001244_050 0.1375241845 - - PREDICTED: uncharacterized protein LOC105643334 [Jatropha curcas]
12 Hb_000853_050 0.1377362914 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_003416_020 0.1385794393 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
14 Hb_000103_230 0.1387828936 - - PREDICTED: chlorophyllase-2, chloroplastic [Jatropha curcas]
15 Hb_003141_060 0.142134608 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
16 Hb_000694_050 0.143609603 - - Nuclease PA3, putative [Ricinus communis]
17 Hb_002601_140 0.1455434511 - - signal transducer, putative [Ricinus communis]
18 Hb_001579_060 0.1474602897 - - carbonic anhydrase, putative [Ricinus communis]
19 Hb_002635_020 0.147915068 - - hypothetical protein POPTR_0018s09790g [Populus trichocarpa]
20 Hb_007765_130 0.1516153179 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000917_200 Hb_000917_200 Hb_006478_050 Hb_006478_050 Hb_000917_200--Hb_006478_050 Hb_000062_050 Hb_000062_050 Hb_000917_200--Hb_000062_050 Hb_093077_010 Hb_093077_010 Hb_000917_200--Hb_093077_010 Hb_016687_010 Hb_016687_010 Hb_000917_200--Hb_016687_010 Hb_000891_010 Hb_000891_010 Hb_000917_200--Hb_000891_010 Hb_008878_020 Hb_008878_020 Hb_000917_200--Hb_008878_020 Hb_001629_120 Hb_001629_120 Hb_006478_050--Hb_001629_120 Hb_000922_160 Hb_000922_160 Hb_006478_050--Hb_000922_160 Hb_000037_200 Hb_000037_200 Hb_006478_050--Hb_000037_200 Hb_002890_160 Hb_002890_160 Hb_006478_050--Hb_002890_160 Hb_000260_410 Hb_000260_410 Hb_006478_050--Hb_000260_410 Hb_001352_030 Hb_001352_030 Hb_006478_050--Hb_001352_030 Hb_000062_050--Hb_000037_200 Hb_000185_170 Hb_000185_170 Hb_000062_050--Hb_000185_170 Hb_000987_020 Hb_000987_020 Hb_000062_050--Hb_000987_020 Hb_070136_010 Hb_070136_010 Hb_000062_050--Hb_070136_010 Hb_001266_130 Hb_001266_130 Hb_000062_050--Hb_001266_130 Hb_000694_050 Hb_000694_050 Hb_000062_050--Hb_000694_050 Hb_093077_010--Hb_000922_160 Hb_003416_020 Hb_003416_020 Hb_093077_010--Hb_003416_020 Hb_093077_010--Hb_006478_050 Hb_093077_010--Hb_000891_010 Hb_001775_120 Hb_001775_120 Hb_093077_010--Hb_001775_120 Hb_000697_020 Hb_000697_020 Hb_016687_010--Hb_000697_020 Hb_003119_130 Hb_003119_130 Hb_016687_010--Hb_003119_130 Hb_003141_060 Hb_003141_060 Hb_016687_010--Hb_003141_060 Hb_016687_010--Hb_008878_020 Hb_001172_150 Hb_001172_150 Hb_016687_010--Hb_001172_150 Hb_061126_010 Hb_061126_010 Hb_016687_010--Hb_061126_010 Hb_000891_010--Hb_000922_160 Hb_000891_010--Hb_006478_050 Hb_000891_010--Hb_001775_120 Hb_000891_010--Hb_002890_160 Hb_001936_190 Hb_001936_190 Hb_000891_010--Hb_001936_190 Hb_000212_270 Hb_000212_270 Hb_008878_020--Hb_000212_270 Hb_002030_090 Hb_002030_090 Hb_008878_020--Hb_002030_090 Hb_008878_020--Hb_000697_020 Hb_008878_020--Hb_001172_150 Hb_008878_020--Hb_001266_130 Hb_008878_020--Hb_006478_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.110473 1.45142 3.41706 1.61154 0.140724 0.311087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.11828 3.82077

CAGE analysis