Hb_001163_020

Information

Type desease resistance
Description Gene Name: ABC_trans_N
Location Contig1163: 22597-40589
Sequence    

Annotation

kegg
ID rcu:RCOM_0792930
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID XP_002529080.1
description ATP-binding cassette transporter, putative [Ricinus communis]
swissprot
ID Q2PCF1
description Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1
trembl
ID B9SSW1
description ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_0792930 PE=4 SV=1
Gene Ontology
ID GO:0016020
description pleiotropic drug resistance protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001163_020 0.0 desease resistance Gene Name: ABC_trans_N ATP-binding cassette transporter, putative [Ricinus communis]
2 Hb_181838_010 0.1338439212 - - PREDICTED: uncharacterized protein LOC105631275 [Jatropha curcas]
3 Hb_000350_030 0.1539598017 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00277 [Jatropha curcas]
4 Hb_000336_200 0.1654295776 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
5 Hb_001793_050 0.1687320432 - - PREDICTED: uncharacterized protein LOC105632663 [Jatropha curcas]
6 Hb_003207_030 0.1713709515 - - hypothetical protein VITISV_027754 [Vitis vinifera]
7 Hb_012799_190 0.1747010214 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
8 Hb_003642_010 0.179692577 - - PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_001675_050 0.1804624013 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
10 Hb_004097_090 0.1844983259 - - PREDICTED: uncharacterized protein LOC105634517 [Jatropha curcas]
11 Hb_003053_050 0.1884955346 - - PREDICTED: putative phospholipid-transporting ATPase 8 [Jatropha curcas]
12 Hb_000665_270 0.1904381911 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
13 Hb_001348_090 0.1953073645 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
14 Hb_000951_120 0.1961773181 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
15 Hb_010984_020 0.1976585239 - - Translation factor GUF1 like, chloroplastic [Glycine soja]
16 Hb_000347_190 0.1990925734 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
17 Hb_126917_010 0.1991596982 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
18 Hb_011386_030 0.1994620587 - - PREDICTED: probable protein phosphatase 2C 26 [Jatropha curcas]
19 Hb_001269_500 0.1997743562 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
20 Hb_016760_010 0.1999541159 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_001163_020 Hb_001163_020 Hb_181838_010 Hb_181838_010 Hb_001163_020--Hb_181838_010 Hb_000350_030 Hb_000350_030 Hb_001163_020--Hb_000350_030 Hb_000336_200 Hb_000336_200 Hb_001163_020--Hb_000336_200 Hb_001793_050 Hb_001793_050 Hb_001163_020--Hb_001793_050 Hb_003207_030 Hb_003207_030 Hb_001163_020--Hb_003207_030 Hb_012799_190 Hb_012799_190 Hb_001163_020--Hb_012799_190 Hb_181838_010--Hb_000350_030 Hb_001348_090 Hb_001348_090 Hb_181838_010--Hb_001348_090 Hb_001221_200 Hb_001221_200 Hb_181838_010--Hb_001221_200 Hb_004242_170 Hb_004242_170 Hb_181838_010--Hb_004242_170 Hb_181838_010--Hb_001793_050 Hb_000347_190 Hb_000347_190 Hb_000350_030--Hb_000347_190 Hb_001677_040 Hb_001677_040 Hb_000350_030--Hb_001677_040 Hb_032631_020 Hb_032631_020 Hb_000350_030--Hb_032631_020 Hb_000056_110 Hb_000056_110 Hb_000350_030--Hb_000056_110 Hb_105033_010 Hb_105033_010 Hb_000350_030--Hb_105033_010 Hb_000665_270 Hb_000665_270 Hb_000336_200--Hb_000665_270 Hb_001269_500 Hb_001269_500 Hb_000336_200--Hb_001269_500 Hb_001649_030 Hb_001649_030 Hb_000336_200--Hb_001649_030 Hb_000465_440 Hb_000465_440 Hb_000336_200--Hb_000465_440 Hb_000358_040 Hb_000358_040 Hb_000336_200--Hb_000358_040 Hb_009288_040 Hb_009288_040 Hb_000336_200--Hb_009288_040 Hb_001793_050--Hb_000665_270 Hb_071079_020 Hb_071079_020 Hb_001793_050--Hb_071079_020 Hb_001793_050--Hb_000336_200 Hb_005063_080 Hb_005063_080 Hb_001793_050--Hb_005063_080 Hb_002811_050 Hb_002811_050 Hb_001793_050--Hb_002811_050 Hb_001793_050--Hb_001269_500 Hb_000976_130 Hb_000976_130 Hb_003207_030--Hb_000976_130 Hb_003207_030--Hb_012799_190 Hb_002085_080 Hb_002085_080 Hb_003207_030--Hb_002085_080 Hb_003207_030--Hb_032631_020 Hb_008616_040 Hb_008616_040 Hb_003207_030--Hb_008616_040 Hb_003207_030--Hb_000665_270 Hb_012799_190--Hb_004242_170 Hb_000834_080 Hb_000834_080 Hb_012799_190--Hb_000834_080 Hb_001053_020 Hb_001053_020 Hb_012799_190--Hb_001053_020 Hb_012799_190--Hb_000336_200 Hb_012799_190--Hb_000976_130 Hb_000762_110 Hb_000762_110 Hb_012799_190--Hb_000762_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00392225 0.00966573 0.0176877 0.0333737 0.00366964 0.017357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00888033 0.00698874 0 0.00553202 0.060046

CAGE analysis