Hb_001793_050

Information

Type -
Description -
Location Contig1793: 45870-65636
Sequence    

Annotation

kegg
ID rcu:RCOM_1697320
description hypothetical protein
nr
ID XP_012070492.1
description PREDICTED: uncharacterized protein LOC105632663 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L6Q7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02764 PE=4 SV=1
Gene Ontology
ID GO:0005739
description PREDICTED: uncharacterized protein LOC105632663

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17331: 15538-65681 , PASA_asmbl_17332: 15493-65585 , PASA_asmbl_17335: 48591-48778 , PASA_asmbl_17336: 23121-61556
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001793_050 0.0 - - PREDICTED: uncharacterized protein LOC105632663 [Jatropha curcas]
2 Hb_000665_270 0.1371784638 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
3 Hb_071079_020 0.1376395338 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
4 Hb_000336_200 0.1398849105 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
5 Hb_005063_080 0.1405077243 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
6 Hb_002811_050 0.142143193 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
7 Hb_001269_500 0.1471874672 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
8 Hb_001793_020 0.1543801813 - - PREDICTED: uncharacterized protein LOC105628624 [Jatropha curcas]
9 Hb_012799_190 0.1566692446 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
10 Hb_000108_150 0.163083711 - - alpha/beta hydrolase, putative [Ricinus communis]
11 Hb_000099_170 0.1650139476 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
12 Hb_181838_010 0.1656290322 - - PREDICTED: uncharacterized protein LOC105631275 [Jatropha curcas]
13 Hb_000061_250 0.1663980529 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
14 Hb_105033_010 0.1678630986 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X2 [Jatropha curcas]
15 Hb_004242_170 0.167982467 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
16 Hb_001163_020 0.1687320432 desease resistance Gene Name: ABC_trans_N ATP-binding cassette transporter, putative [Ricinus communis]
17 Hb_000465_440 0.1694648672 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2-like [Jatropha curcas]
18 Hb_000152_490 0.1713874254 - - PREDICTED: (6-4)DNA photolyase [Jatropha curcas]
19 Hb_005479_010 0.1736231453 - - PREDICTED: uncharacterized protein LOC105111002 [Populus euphratica]
20 Hb_003207_030 0.1739543789 - - hypothetical protein VITISV_027754 [Vitis vinifera]

Gene co-expression network

sample Hb_001793_050 Hb_001793_050 Hb_000665_270 Hb_000665_270 Hb_001793_050--Hb_000665_270 Hb_071079_020 Hb_071079_020 Hb_001793_050--Hb_071079_020 Hb_000336_200 Hb_000336_200 Hb_001793_050--Hb_000336_200 Hb_005063_080 Hb_005063_080 Hb_001793_050--Hb_005063_080 Hb_002811_050 Hb_002811_050 Hb_001793_050--Hb_002811_050 Hb_001269_500 Hb_001269_500 Hb_001793_050--Hb_001269_500 Hb_000465_440 Hb_000465_440 Hb_000665_270--Hb_000465_440 Hb_001649_030 Hb_001649_030 Hb_000665_270--Hb_001649_030 Hb_000665_270--Hb_000336_200 Hb_000665_270--Hb_001269_500 Hb_000358_040 Hb_000358_040 Hb_000665_270--Hb_000358_040 Hb_009288_040 Hb_009288_040 Hb_000665_270--Hb_009288_040 Hb_000108_150 Hb_000108_150 Hb_071079_020--Hb_000108_150 Hb_000045_050 Hb_000045_050 Hb_071079_020--Hb_000045_050 Hb_000099_170 Hb_000099_170 Hb_071079_020--Hb_000099_170 Hb_000061_250 Hb_000061_250 Hb_071079_020--Hb_000061_250 Hb_004242_170 Hb_004242_170 Hb_071079_020--Hb_004242_170 Hb_005181_120 Hb_005181_120 Hb_071079_020--Hb_005181_120 Hb_000336_200--Hb_001269_500 Hb_000336_200--Hb_001649_030 Hb_000336_200--Hb_000465_440 Hb_000336_200--Hb_000358_040 Hb_000336_200--Hb_009288_040 Hb_005618_150 Hb_005618_150 Hb_005063_080--Hb_005618_150 Hb_005063_080--Hb_000665_270 Hb_001907_070 Hb_001907_070 Hb_005063_080--Hb_001907_070 Hb_006911_070 Hb_006911_070 Hb_005063_080--Hb_006911_070 Hb_006198_130 Hb_006198_130 Hb_005063_080--Hb_006198_130 Hb_005063_080--Hb_000336_200 Hb_007982_040 Hb_007982_040 Hb_002811_050--Hb_007982_040 Hb_002811_050--Hb_000099_170 Hb_000264_280 Hb_000264_280 Hb_002811_050--Hb_000264_280 Hb_002811_050--Hb_071079_020 Hb_000208_270 Hb_000208_270 Hb_002811_050--Hb_000208_270 Hb_002811_050--Hb_005181_120 Hb_001269_500--Hb_001649_030 Hb_009687_020 Hb_009687_020 Hb_001269_500--Hb_009687_020 Hb_001269_500--Hb_000264_280 Hb_001269_500--Hb_006198_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.65282 4.48822 15.2913 16.9068 4.7168 4.24357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.40956 2.39668 0.124368 0.815211 30.7996

CAGE analysis