Hb_000227_100

Information

Type -
Description -
Location Contig227: 65953-66818
Sequence    

Annotation

kegg
ID tcc:TCM_020542
description hypothetical protein
nr
ID XP_012069551.1
description PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KYS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02121 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23594: 65944-66916 , PASA_asmbl_23595: 65945-66916
cDNA
(Sanger)
(ID:Location)		 011_H15.ab1: 65945-66809 , 012_M06.ab1: 65950-66603 , 016_B07.ab1: 65950-66821 , 023_E03.ab1: 65944-66681 , 023_L14.ab1: 65945-66690 , 023_P15.ab1: 65944-66759 , 027_E18.ab1: 65944-66758 , 029_D04.ab1: 65944-66738

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_100 0.0 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
2 Hb_012760_120 0.1150386294 - - PREDICTED: peroxidase 64-like [Jatropha curcas]
3 Hb_008112_020 0.1157383315 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
4 Hb_004979_050 0.1176776278 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
5 Hb_003090_240 0.1246653598 - - hypothetical protein JCGZ_25095 [Jatropha curcas]
6 Hb_001959_100 0.1274597416 - - ammonium transporter, putative [Ricinus communis]
7 Hb_000684_400 0.1287275878 - - PREDICTED: uncharacterized protein LOC105642159 [Jatropha curcas]
8 Hb_002044_070 0.1324478165 - - Chlorophyll a-b binding protein 3, chloroplastic [Theobroma cacao]
9 Hb_004586_270 0.13341914 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2 isoform X2 [Jatropha curcas]
10 Hb_011214_080 0.1343042747 - - sucrose synthase 1 [Hevea brasiliensis]
11 Hb_012633_060 0.1369699169 - - laccase, putative [Ricinus communis]
12 Hb_000367_220 0.1384241114 - - hypothetical protein RCOM_1470580 [Ricinus communis]
13 Hb_000679_320 0.1398346809 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]
14 Hb_000200_360 0.1412272554 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
15 Hb_006472_040 0.1459506818 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
16 Hb_000134_080 0.1461898517 - - synaptotagmin, putative [Ricinus communis]
17 Hb_008226_010 0.147650801 - - PREDICTED: uncharacterized protein LOC105649179 [Jatropha curcas]
18 Hb_007595_020 0.1477435773 - - maturase K [Hevea brasiliensis]
19 Hb_002338_040 0.1481051828 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000340_240 0.1502841203 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000227_100 Hb_000227_100 Hb_012760_120 Hb_012760_120 Hb_000227_100--Hb_012760_120 Hb_008112_020 Hb_008112_020 Hb_000227_100--Hb_008112_020 Hb_004979_050 Hb_004979_050 Hb_000227_100--Hb_004979_050 Hb_003090_240 Hb_003090_240 Hb_000227_100--Hb_003090_240 Hb_001959_100 Hb_001959_100 Hb_000227_100--Hb_001959_100 Hb_000684_400 Hb_000684_400 Hb_000227_100--Hb_000684_400 Hb_011214_080 Hb_011214_080 Hb_012760_120--Hb_011214_080 Hb_000538_110 Hb_000538_110 Hb_012760_120--Hb_000538_110 Hb_018487_040 Hb_018487_040 Hb_012760_120--Hb_018487_040 Hb_001488_160 Hb_001488_160 Hb_012760_120--Hb_001488_160 Hb_005483_040 Hb_005483_040 Hb_012760_120--Hb_005483_040 Hb_002044_070 Hb_002044_070 Hb_012760_120--Hb_002044_070 Hb_006472_040 Hb_006472_040 Hb_008112_020--Hb_006472_040 Hb_001195_290 Hb_001195_290 Hb_008112_020--Hb_001195_290 Hb_022693_010 Hb_022693_010 Hb_008112_020--Hb_022693_010 Hb_008112_020--Hb_004979_050 Hb_000679_320 Hb_000679_320 Hb_008112_020--Hb_000679_320 Hb_169383_010 Hb_169383_010 Hb_008112_020--Hb_169383_010 Hb_004979_050--Hb_000679_320 Hb_000359_160 Hb_000359_160 Hb_004979_050--Hb_000359_160 Hb_001266_160 Hb_001266_160 Hb_004979_050--Hb_001266_160 Hb_001517_010 Hb_001517_010 Hb_004979_050--Hb_001517_010 Hb_004979_050--Hb_006472_040 Hb_002805_280 Hb_002805_280 Hb_003090_240--Hb_002805_280 Hb_002387_010 Hb_002387_010 Hb_003090_240--Hb_002387_010 Hb_002042_210 Hb_002042_210 Hb_003090_240--Hb_002042_210 Hb_000739_280 Hb_000739_280 Hb_003090_240--Hb_000739_280 Hb_008195_090 Hb_008195_090 Hb_003090_240--Hb_008195_090 Hb_006291_050 Hb_006291_050 Hb_003090_240--Hb_006291_050 Hb_000340_240 Hb_000340_240 Hb_001959_100--Hb_000340_240 Hb_001959_100--Hb_012760_120 Hb_000200_360 Hb_000200_360 Hb_001959_100--Hb_000200_360 Hb_001959_100--Hb_000538_110 Hb_001959_100--Hb_011214_080 Hb_001124_230 Hb_001124_230 Hb_000684_400--Hb_001124_230 Hb_000684_400--Hb_169383_010 Hb_000684_400--Hb_006472_040 Hb_000684_400--Hb_008112_020 Hb_000005_370 Hb_000005_370 Hb_000684_400--Hb_000005_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6795 17.7787 132.086 234.575 3.76176 7.43127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.1001 10.5347 5.75531 3.56613 666.468

CAGE analysis