Hb_002042_210

Information

Type -
Description -
Location Contig2042: 193127-195109
Sequence    

Annotation

kegg
ID rcu:RCOM_1430470
description hypothetical protein
nr
ID XP_012089106.1
description PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
swissprot
ID Q9ZVL6
description UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana GN=At1g54780 PE=1 SV=1
trembl
ID A0A067JHX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23384 PE=4 SV=1
Gene Ontology
ID GO:0009534
description upf0603 protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20963: 193147-195165 , PASA_asmbl_20964: 194016-195159 , PASA_asmbl_20965: 193579-195159
cDNA
(Sanger)
(ID:Location)		 048_B13.ab1: 193234-194929

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002042_210 0.0 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
2 Hb_131466_010 0.0644364076 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
3 Hb_044478_010 0.0648881649 - - plastoquinol-plastocyanin reductase, putative [Ricinus communis]
4 Hb_006291_050 0.0680069142 - - PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_002805_280 0.0731043009 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
6 Hb_003033_020 0.0786322881 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
7 Hb_005111_040 0.0799002671 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
8 Hb_006573_240 0.0815723033 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
9 Hb_002387_010 0.0825353462 - - PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Jatropha curcas]
10 Hb_008195_090 0.0843341718 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001999_230 0.0876648878 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
12 Hb_029991_010 0.0882051061 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]
13 Hb_000392_470 0.0887276967 - - conserved hypothetical protein [Ricinus communis]
14 Hb_153258_040 0.0891792026 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
15 Hb_001564_120 0.0896996099 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
16 Hb_000099_120 0.0901666926 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
17 Hb_000307_100 0.0919315015 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
18 Hb_001007_070 0.0928620838 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
19 Hb_000482_180 0.0934340029 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
20 Hb_004052_030 0.0947034289 - - PREDICTED: uncharacterized protein LOC105640637 [Jatropha curcas]

Gene co-expression network

sample Hb_002042_210 Hb_002042_210 Hb_131466_010 Hb_131466_010 Hb_002042_210--Hb_131466_010 Hb_044478_010 Hb_044478_010 Hb_002042_210--Hb_044478_010 Hb_006291_050 Hb_006291_050 Hb_002042_210--Hb_006291_050 Hb_002805_280 Hb_002805_280 Hb_002042_210--Hb_002805_280 Hb_003033_020 Hb_003033_020 Hb_002042_210--Hb_003033_020 Hb_005111_040 Hb_005111_040 Hb_002042_210--Hb_005111_040 Hb_029991_010 Hb_029991_010 Hb_131466_010--Hb_029991_010 Hb_131466_010--Hb_006291_050 Hb_009193_070 Hb_009193_070 Hb_131466_010--Hb_009193_070 Hb_004607_110 Hb_004607_110 Hb_131466_010--Hb_004607_110 Hb_028491_010 Hb_028491_010 Hb_131466_010--Hb_028491_010 Hb_153258_040 Hb_153258_040 Hb_044478_010--Hb_153258_040 Hb_044478_010--Hb_131466_010 Hb_001946_120 Hb_001946_120 Hb_044478_010--Hb_001946_120 Hb_044478_010--Hb_005111_040 Hb_001999_230 Hb_001999_230 Hb_044478_010--Hb_001999_230 Hb_006291_050--Hb_005111_040 Hb_006291_050--Hb_009193_070 Hb_006573_240 Hb_006573_240 Hb_006291_050--Hb_006573_240 Hb_006291_050--Hb_044478_010 Hb_002387_010 Hb_002387_010 Hb_002805_280--Hb_002387_010 Hb_008195_090 Hb_008195_090 Hb_002805_280--Hb_008195_090 Hb_003090_240 Hb_003090_240 Hb_002805_280--Hb_003090_240 Hb_002805_280--Hb_004607_110 Hb_002805_280--Hb_029991_010 Hb_003033_020--Hb_006573_240 Hb_001191_060 Hb_001191_060 Hb_003033_020--Hb_001191_060 Hb_003186_030 Hb_003186_030 Hb_003033_020--Hb_003186_030 Hb_010697_020 Hb_010697_020 Hb_003033_020--Hb_010697_020 Hb_003787_030 Hb_003787_030 Hb_003033_020--Hb_003787_030 Hb_000307_100 Hb_000307_100 Hb_003033_020--Hb_000307_100 Hb_000482_180 Hb_000482_180 Hb_005111_040--Hb_000482_180 Hb_001007_070 Hb_001007_070 Hb_005111_040--Hb_001007_070 Hb_005111_040--Hb_009193_070 Hb_005111_040--Hb_131466_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.111381 3.26334 46.5584 42.8629 0.139569 0.0218856
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.324428 0.546811 0.337017 3.29299 133.552

CAGE analysis