Hb_003090_240

Information

Type -
Description -
Location Contig3090: 236474-239884
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa002319mg
description hypothetical protein
nr
ID KDP24531.1
description hypothetical protein JCGZ_25095 [Jatropha curcas]
swissprot
ID Q9LZN0
description Rop guanine nucleotide exchange factor 7 OS=Arabidopsis thaliana GN=ROPGEF7 PE=1 SV=1
trembl
ID A0A067JKL9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25095 PE=4 SV=1
Gene Ontology
ID GO:0005829
description rop guanine nucleotide exchange factor 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003090_240 0.0 - - hypothetical protein JCGZ_25095 [Jatropha curcas]
2 Hb_002805_280 0.0734792433 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
3 Hb_002387_010 0.0840511788 - - PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Jatropha curcas]
4 Hb_002042_210 0.0951772349 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
5 Hb_000739_280 0.0983787608 - - alcohol dehydrogenase, putative [Ricinus communis]
6 Hb_008195_090 0.1016235147 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006291_050 0.1056530726 - - PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_006573_240 0.106205683 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
9 Hb_002329_050 0.1069982923 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003787_030 0.1089127118 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000477_090 0.1109533294 - - PREDICTED: uncharacterized protein LOC105639302 [Jatropha curcas]
12 Hb_033681_030 0.1117129714 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
13 Hb_002044_070 0.1125797669 - - Chlorophyll a-b binding protein 3, chloroplastic [Theobroma cacao]
14 Hb_011214_080 0.1129496792 - - sucrose synthase 1 [Hevea brasiliensis]
15 Hb_000268_050 0.1131645071 - - PREDICTED: tetrapyrrole-binding protein, chloroplastic [Jatropha curcas]
16 Hb_002413_050 0.1156833842 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
17 Hb_012760_120 0.1157384656 - - PREDICTED: peroxidase 64-like [Jatropha curcas]
18 Hb_044478_010 0.1160242438 - - plastoquinol-plastocyanin reductase, putative [Ricinus communis]
19 Hb_000928_260 0.1165159842 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
20 Hb_008112_020 0.1196725718 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003090_240 Hb_003090_240 Hb_002805_280 Hb_002805_280 Hb_003090_240--Hb_002805_280 Hb_002387_010 Hb_002387_010 Hb_003090_240--Hb_002387_010 Hb_002042_210 Hb_002042_210 Hb_003090_240--Hb_002042_210 Hb_000739_280 Hb_000739_280 Hb_003090_240--Hb_000739_280 Hb_008195_090 Hb_008195_090 Hb_003090_240--Hb_008195_090 Hb_006291_050 Hb_006291_050 Hb_003090_240--Hb_006291_050 Hb_002805_280--Hb_002387_010 Hb_002805_280--Hb_008195_090 Hb_002805_280--Hb_002042_210 Hb_004607_110 Hb_004607_110 Hb_002805_280--Hb_004607_110 Hb_029991_010 Hb_029991_010 Hb_002805_280--Hb_029991_010 Hb_002387_010--Hb_004607_110 Hb_002387_010--Hb_008195_090 Hb_044478_010 Hb_044478_010 Hb_002387_010--Hb_044478_010 Hb_002387_010--Hb_029991_010 Hb_003913_120 Hb_003913_120 Hb_002387_010--Hb_003913_120 Hb_131466_010 Hb_131466_010 Hb_002042_210--Hb_131466_010 Hb_002042_210--Hb_044478_010 Hb_002042_210--Hb_006291_050 Hb_003033_020 Hb_003033_020 Hb_002042_210--Hb_003033_020 Hb_005111_040 Hb_005111_040 Hb_002042_210--Hb_005111_040 Hb_005062_100 Hb_005062_100 Hb_000739_280--Hb_005062_100 Hb_001488_160 Hb_001488_160 Hb_000739_280--Hb_001488_160 Hb_005066_040 Hb_005066_040 Hb_000739_280--Hb_005066_040 Hb_000002_110 Hb_000002_110 Hb_000739_280--Hb_000002_110 Hb_001699_110 Hb_001699_110 Hb_000739_280--Hb_001699_110 Hb_000260_520 Hb_000260_520 Hb_000739_280--Hb_000260_520 Hb_003151_020 Hb_003151_020 Hb_008195_090--Hb_003151_020 Hb_004563_010 Hb_004563_010 Hb_008195_090--Hb_004563_010 Hb_008195_090--Hb_029991_010 Hb_033681_030 Hb_033681_030 Hb_008195_090--Hb_033681_030 Hb_006291_050--Hb_005111_040 Hb_006291_050--Hb_131466_010 Hb_009193_070 Hb_009193_070 Hb_006291_050--Hb_009193_070 Hb_006573_240 Hb_006573_240 Hb_006291_050--Hb_006573_240 Hb_006291_050--Hb_044478_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00957151 0.0648451 0.910147 1.33026 0 0.00917076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0217481 0.068449 0 0.0476412 3.51133

CAGE analysis