Hb_012633_060

Information

Type -
Description -
Location Contig12633: 47642-50531
Sequence    

Annotation

kegg
ID rcu:RCOM_0452120
description laccase, putative (EC:1.10.3.3)
nr
ID XP_002531562.1
description laccase, putative [Ricinus communis]
swissprot
ID O80434
description Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV=2
trembl
ID B9SZZ3
description Laccase OS=Ricinus communis GN=RCOM_0452120 PE=3 SV=1
Gene Ontology
ID GO:0048046
description laccase 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07980: 48015-48973
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012633_060 0.0 - - laccase, putative [Ricinus communis]
2 Hb_000200_360 0.1316882099 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
3 Hb_001959_100 0.1361107738 - - ammonium transporter, putative [Ricinus communis]
4 Hb_000270_340 0.1363243747 - - hypothetical protein JCGZ_11546 [Jatropha curcas]
5 Hb_000227_100 0.1369699169 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
6 Hb_000340_240 0.1435428069 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000538_110 0.1457969207 - - sucrose synthase 1 [Hevea brasiliensis]
8 Hb_001097_030 0.1480711654 - - nuclear transport factor, putative [Ricinus communis]
9 Hb_012760_120 0.1541460745 - - PREDICTED: peroxidase 64-like [Jatropha curcas]
10 Hb_001163_010 0.155917374 - - PREDICTED: syncoilin [Jatropha curcas]
11 Hb_000427_020 0.1562134061 - - PsbA, partial [Dianthus pygmaeus]
12 Hb_000134_080 0.1567536964 - - synaptotagmin, putative [Ricinus communis]
13 Hb_000061_290 0.1573400041 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011214_080 0.1586180566 - - sucrose synthase 1 [Hevea brasiliensis]
15 Hb_008226_010 0.1613251292 - - PREDICTED: uncharacterized protein LOC105649179 [Jatropha curcas]
16 Hb_001278_020 0.1622437462 - - sucrose synthase 6 [Hevea brasiliensis]
17 Hb_005062_100 0.1673183244 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
18 Hb_000220_060 0.1677502221 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 15 [Jatropha curcas]
19 Hb_003038_070 0.1703523679 - - syntaxin, putative [Ricinus communis]
20 Hb_000139_060 0.1711670861 - - Photosystem I reaction center subunit II, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_012633_060 Hb_012633_060 Hb_000200_360 Hb_000200_360 Hb_012633_060--Hb_000200_360 Hb_001959_100 Hb_001959_100 Hb_012633_060--Hb_001959_100 Hb_000270_340 Hb_000270_340 Hb_012633_060--Hb_000270_340 Hb_000227_100 Hb_000227_100 Hb_012633_060--Hb_000227_100 Hb_000340_240 Hb_000340_240 Hb_012633_060--Hb_000340_240 Hb_000538_110 Hb_000538_110 Hb_012633_060--Hb_000538_110 Hb_000200_360--Hb_001959_100 Hb_000200_360--Hb_000227_100 Hb_003261_010 Hb_003261_010 Hb_000200_360--Hb_003261_010 Hb_000684_400 Hb_000684_400 Hb_000200_360--Hb_000684_400 Hb_000200_360--Hb_000340_240 Hb_001959_100--Hb_000340_240 Hb_012760_120 Hb_012760_120 Hb_001959_100--Hb_012760_120 Hb_001959_100--Hb_000538_110 Hb_001959_100--Hb_000227_100 Hb_011214_080 Hb_011214_080 Hb_001959_100--Hb_011214_080 Hb_001097_030 Hb_001097_030 Hb_000270_340--Hb_001097_030 Hb_001163_010 Hb_001163_010 Hb_000270_340--Hb_001163_010 Hb_000427_020 Hb_000427_020 Hb_000270_340--Hb_000427_020 Hb_000270_340--Hb_000538_110 Hb_000076_240 Hb_000076_240 Hb_000270_340--Hb_000076_240 Hb_000122_230 Hb_000122_230 Hb_000270_340--Hb_000122_230 Hb_000227_100--Hb_012760_120 Hb_008112_020 Hb_008112_020 Hb_000227_100--Hb_008112_020 Hb_004979_050 Hb_004979_050 Hb_000227_100--Hb_004979_050 Hb_003090_240 Hb_003090_240 Hb_000227_100--Hb_003090_240 Hb_000227_100--Hb_000684_400 Hb_000340_240--Hb_012760_120 Hb_000220_060 Hb_000220_060 Hb_000340_240--Hb_000220_060 Hb_000340_240--Hb_000538_110 Hb_010738_020 Hb_010738_020 Hb_000340_240--Hb_010738_020 Hb_000340_240--Hb_011214_080 Hb_000538_110--Hb_001097_030 Hb_000538_110--Hb_011214_080 Hb_005062_100 Hb_005062_100 Hb_000538_110--Hb_005062_100 Hb_002119_150 Hb_002119_150 Hb_000538_110--Hb_002119_150 Hb_000029_210 Hb_000029_210 Hb_000538_110--Hb_000029_210 Hb_000538_110--Hb_012760_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.297437 0.110591 0.99066 4.10972 0.0585328 0.0628675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.111911 0.017611 0.200416 0.0420355 7.22195

CAGE analysis