Hb_000445_120

Information

Type -
Description -
Location Contig445: 144636-148840
Sequence    

Annotation

kegg
ID rcu:RCOM_0561590
description ATP binding protein, putative (EC:2.7.11.19)
nr
ID XP_002520305.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9LV48
description Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=2 SV=1
trembl
ID B9S2T6
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0561590 PE=3 SV=1
Gene Ontology
ID GO:0004689
description probable receptor-like serine threonine-protein kinase at5g57670

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42883: 144589-146023 , PASA_asmbl_42884: 144589-146023 , PASA_asmbl_42885: 146995-148799
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_120 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_000264_040 0.1114219274 - - sugar transporter, putative [Ricinus communis]
3 Hb_002886_010 0.1230764356 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000189_440 0.139958075 - - hypothetical protein JCGZ_23470 [Jatropha curcas]
5 Hb_000805_010 0.1558355597 - - PREDICTED: uncharacterized protein LOC105629931 [Jatropha curcas]
6 Hb_000649_040 0.1585855779 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
7 Hb_002759_050 0.1614418901 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
8 Hb_003226_250 0.1627935341 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
9 Hb_001369_010 0.1640858488 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
10 Hb_003935_070 0.1677546031 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
11 Hb_005228_040 0.1682449926 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
12 Hb_121089_050 0.1689911329 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000438_120 0.1740524369 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
14 Hb_002817_040 0.1761032277 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
15 Hb_004041_050 0.1768915543 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
16 Hb_000984_210 0.1772953937 - - PREDICTED: uncharacterized protein LOC104451821 [Eucalyptus grandis]
17 Hb_019613_010 0.1777968144 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_002759_220 0.1804681364 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
19 Hb_183963_010 0.1806830211 - - core region of GTP cyclohydrolase I family protein [Populus trichocarpa]
20 Hb_000200_360 0.182671684 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]

Gene co-expression network

sample Hb_000445_120 Hb_000445_120 Hb_000264_040 Hb_000264_040 Hb_000445_120--Hb_000264_040 Hb_002886_010 Hb_002886_010 Hb_000445_120--Hb_002886_010 Hb_000189_440 Hb_000189_440 Hb_000445_120--Hb_000189_440 Hb_000805_010 Hb_000805_010 Hb_000445_120--Hb_000805_010 Hb_000649_040 Hb_000649_040 Hb_000445_120--Hb_000649_040 Hb_002759_050 Hb_002759_050 Hb_000445_120--Hb_002759_050 Hb_000264_040--Hb_002886_010 Hb_000264_040--Hb_002759_050 Hb_000301_040 Hb_000301_040 Hb_000264_040--Hb_000301_040 Hb_005730_060 Hb_005730_060 Hb_000264_040--Hb_005730_060 Hb_000200_360 Hb_000200_360 Hb_000264_040--Hb_000200_360 Hb_002886_010--Hb_002759_050 Hb_002886_010--Hb_000301_040 Hb_001959_100 Hb_001959_100 Hb_002886_010--Hb_001959_100 Hb_002886_010--Hb_000200_360 Hb_000984_210 Hb_000984_210 Hb_000189_440--Hb_000984_210 Hb_005228_040 Hb_005228_040 Hb_000189_440--Hb_005228_040 Hb_011310_040 Hb_011310_040 Hb_000189_440--Hb_011310_040 Hb_002596_080 Hb_002596_080 Hb_000189_440--Hb_002596_080 Hb_000189_440--Hb_000805_010 Hb_003935_070 Hb_003935_070 Hb_000805_010--Hb_003935_070 Hb_015141_010 Hb_015141_010 Hb_000805_010--Hb_015141_010 Hb_002759_220 Hb_002759_220 Hb_000805_010--Hb_002759_220 Hb_002817_040 Hb_002817_040 Hb_000805_010--Hb_002817_040 Hb_002235_110 Hb_002235_110 Hb_000805_010--Hb_002235_110 Hb_000395_010 Hb_000395_010 Hb_000805_010--Hb_000395_010 Hb_000107_350 Hb_000107_350 Hb_000649_040--Hb_000107_350 Hb_000649_040--Hb_003935_070 Hb_000808_150 Hb_000808_150 Hb_000649_040--Hb_000808_150 Hb_000077_310 Hb_000077_310 Hb_000649_040--Hb_000077_310 Hb_000749_020 Hb_000749_020 Hb_000649_040--Hb_000749_020 Hb_000649_040--Hb_000805_010 Hb_003261_010 Hb_003261_010 Hb_002759_050--Hb_003261_010 Hb_002759_050--Hb_000200_360 Hb_002759_050--Hb_001959_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.629238 0.809491 11.1912 23.4033 0.622805 0.908389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.6874 4.53101 4.27666 1.05806 30.408

CAGE analysis