Hb_002592_020

Information

Type -
Description -
Location Contig2592: 60214-66019
Sequence    

Annotation

kegg
ID rcu:RCOM_0100300
description Tyrosine-protein phosphatase SIW14, putative
nr
ID XP_012080649.1
description PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]
swissprot
ID Q9ZVN4
description Probable tyrosine-protein phosphatase At1g05000 OS=Arabidopsis thaliana GN=At1g05000 PE=1 SV=1
trembl
ID A0A067KG52
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13757 PE=4 SV=1
Gene Ontology
ID GO:0004725
description probable tyrosine-protein phosphatase at1g05000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26886: 60214-66029 , PASA_asmbl_26887: 63594-63871
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002592_020 0.0 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]
2 Hb_003583_010 0.1670200904 - - PREDICTED: patatin-like protein 6 [Jatropha curcas]
3 Hb_000510_280 0.1744665404 transcription factor TF Family: AUX/IAA PREDICTED: auxin-induced protein 22D-like [Jatropha curcas]
4 Hb_000959_320 0.1746460189 - - PREDICTED: uncharacterized protein LOC105778325 [Gossypium raimondii]
5 Hb_000920_230 0.1938482945 - - DNA binding protein, putative [Ricinus communis]
6 Hb_005181_140 0.2051196873 - - hypothetical protein JCGZ_19000 [Jatropha curcas]
7 Hb_007625_010 0.2068484489 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000003_210 0.22665306 - - PREDICTED: GEM-like protein 4 [Jatropha curcas]
9 Hb_022092_080 0.2281784202 - - -
10 Hb_000130_460 0.2295745199 - - hypothetical protein JCGZ_15296 [Jatropha curcas]
11 Hb_000853_180 0.2302725218 - - kinesin heavy chain, putative [Ricinus communis]
12 Hb_004079_070 0.2391883017 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
13 Hb_000907_160 0.2406346142 - - calcineurin-like phosphoesterase [Manihot esculenta]
14 Hb_010810_060 0.2417112287 - - sterol desaturase, putative [Ricinus communis]
15 Hb_000190_170 0.2417609442 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
16 Hb_001956_130 0.241803609 - - catalytic, putative [Ricinus communis]
17 Hb_004096_230 0.2419933582 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
18 Hb_006569_080 0.24292173 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_024559 [Vitis vinifera]
19 Hb_002200_030 0.2440383826 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
20 Hb_004883_010 0.2442809468 - - hypothetical protein JCGZ_23144 [Jatropha curcas]

Gene co-expression network

sample Hb_002592_020 Hb_002592_020 Hb_003583_010 Hb_003583_010 Hb_002592_020--Hb_003583_010 Hb_000510_280 Hb_000510_280 Hb_002592_020--Hb_000510_280 Hb_000959_320 Hb_000959_320 Hb_002592_020--Hb_000959_320 Hb_000920_230 Hb_000920_230 Hb_002592_020--Hb_000920_230 Hb_005181_140 Hb_005181_140 Hb_002592_020--Hb_005181_140 Hb_007625_010 Hb_007625_010 Hb_002592_020--Hb_007625_010 Hb_003583_010--Hb_000959_320 Hb_000130_460 Hb_000130_460 Hb_003583_010--Hb_000130_460 Hb_000190_170 Hb_000190_170 Hb_003583_010--Hb_000190_170 Hb_000003_210 Hb_000003_210 Hb_003583_010--Hb_000003_210 Hb_000140_320 Hb_000140_320 Hb_003583_010--Hb_000140_320 Hb_003583_010--Hb_007625_010 Hb_002968_050 Hb_002968_050 Hb_000510_280--Hb_002968_050 Hb_000445_120 Hb_000445_120 Hb_000510_280--Hb_000445_120 Hb_000264_040 Hb_000264_040 Hb_000510_280--Hb_000264_040 Hb_000094_170 Hb_000094_170 Hb_000510_280--Hb_000094_170 Hb_000438_120 Hb_000438_120 Hb_000510_280--Hb_000438_120 Hb_003050_020 Hb_003050_020 Hb_000959_320--Hb_003050_020 Hb_000907_160 Hb_000907_160 Hb_000959_320--Hb_000907_160 Hb_000959_320--Hb_000920_230 Hb_000103_070 Hb_000103_070 Hb_000959_320--Hb_000103_070 Hb_000959_320--Hb_000003_210 Hb_000920_230--Hb_000907_160 Hb_002498_030 Hb_002498_030 Hb_000920_230--Hb_002498_030 Hb_000920_230--Hb_003050_020 Hb_017439_010 Hb_017439_010 Hb_000920_230--Hb_017439_010 Hb_005833_010 Hb_005833_010 Hb_005181_140--Hb_005833_010 Hb_163566_010 Hb_163566_010 Hb_005181_140--Hb_163566_010 Hb_004079_070 Hb_004079_070 Hb_005181_140--Hb_004079_070 Hb_010577_020 Hb_010577_020 Hb_005181_140--Hb_010577_020 Hb_005181_140--Hb_000130_460 Hb_000358_260 Hb_000358_260 Hb_005181_140--Hb_000358_260 Hb_001956_130 Hb_001956_130 Hb_007625_010--Hb_001956_130 Hb_006816_380 Hb_006816_380 Hb_007625_010--Hb_006816_380 Hb_000915_170 Hb_000915_170 Hb_007625_010--Hb_000915_170 Hb_002200_030 Hb_002200_030 Hb_007625_010--Hb_002200_030 Hb_000103_200 Hb_000103_200 Hb_007625_010--Hb_000103_200 Hb_000816_140 Hb_000816_140 Hb_007625_010--Hb_000816_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0236809 0.0727282 6.01618 10.7324 0 0.15021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.694113 2.52515 0 0.0273685 5.63142

CAGE analysis