Hb_004079_070

Information

Type -
Description -
Location Contig4079: 53193-53438
Sequence    

Annotation

kegg
ID tcc:TCM_037897
description hypothetical protein
nr
ID KDP33659.1
description hypothetical protein JCGZ_07230 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KPE6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40360: 52965-53471
cDNA
(Sanger)
(ID:Location)		 014_K20.ab1: 52967-53471 , 046_F09.ab1: 52965-53471

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004079_070 0.0 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
2 Hb_011549_040 0.0771838092 - - -
3 Hb_000933_030 0.0795117025 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
4 Hb_000815_050 0.081462517 - - PREDICTED: expansin-A1 [Populus euphratica]
5 Hb_000816_140 0.0841513005 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
6 Hb_068804_190 0.0899031247 - - kinase, putative [Ricinus communis]
7 Hb_166360_010 0.0906463296 - - hypothetical protein POPTR_0010s12130g [Populus trichocarpa]
8 Hb_000742_070 0.0910500063 - - PREDICTED: monoglyceride lipase isoform X2 [Bubalus bubalis]
9 Hb_000057_090 0.0917256657 - - hypothetical protein RCOM_1494490 [Ricinus communis]
10 Hb_162450_010 0.0931294615 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
11 Hb_010577_020 0.0945450724 - - -
12 Hb_002740_140 0.0947671346 - - hypothetical protein L484_022679 [Morus notabilis]
13 Hb_012653_050 0.0975246327 - - hypothetical protein RCOM_0460020 [Ricinus communis]
14 Hb_005532_080 0.0987306691 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
15 Hb_023582_030 0.0992473438 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_056506_040 0.1008688442 - - -
17 Hb_010883_170 0.1026635204 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
18 Hb_017110_030 0.1043949986 - - PREDICTED: subtilisin-like protease SBT5.4 [Jatropha curcas]
19 Hb_004218_270 0.1077363807 - - hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]
20 Hb_049955_010 0.1081885975 - - hypothetical protein EUGRSUZ_B00742 [Eucalyptus grandis]

Gene co-expression network

sample Hb_004079_070 Hb_004079_070 Hb_011549_040 Hb_011549_040 Hb_004079_070--Hb_011549_040 Hb_000933_030 Hb_000933_030 Hb_004079_070--Hb_000933_030 Hb_000815_050 Hb_000815_050 Hb_004079_070--Hb_000815_050 Hb_000816_140 Hb_000816_140 Hb_004079_070--Hb_000816_140 Hb_068804_190 Hb_068804_190 Hb_004079_070--Hb_068804_190 Hb_166360_010 Hb_166360_010 Hb_004079_070--Hb_166360_010 Hb_011549_040--Hb_068804_190 Hb_011549_040--Hb_166360_010 Hb_011549_040--Hb_000933_030 Hb_005532_080 Hb_005532_080 Hb_011549_040--Hb_005532_080 Hb_056506_040 Hb_056506_040 Hb_011549_040--Hb_056506_040 Hb_010577_020 Hb_010577_020 Hb_011549_040--Hb_010577_020 Hb_000742_070 Hb_000742_070 Hb_000933_030--Hb_000742_070 Hb_023582_030 Hb_023582_030 Hb_000933_030--Hb_023582_030 Hb_000933_030--Hb_166360_010 Hb_004218_270 Hb_004218_270 Hb_000933_030--Hb_004218_270 Hb_000134_190 Hb_000134_190 Hb_000933_030--Hb_000134_190 Hb_000815_050--Hb_000742_070 Hb_000815_050--Hb_023582_030 Hb_000815_050--Hb_000816_140 Hb_000815_050--Hb_000933_030 Hb_000815_050--Hb_000134_190 Hb_010883_170 Hb_010883_170 Hb_000816_140--Hb_010883_170 Hb_007113_060 Hb_007113_060 Hb_000816_140--Hb_007113_060 Hb_006922_120 Hb_006922_120 Hb_000816_140--Hb_006922_120 Hb_012653_050 Hb_012653_050 Hb_000816_140--Hb_012653_050 Hb_000057_090 Hb_000057_090 Hb_000816_140--Hb_000057_090 Hb_068804_190--Hb_005532_080 Hb_068804_190--Hb_166360_010 Hb_068804_190--Hb_056506_040 Hb_000111_490 Hb_000111_490 Hb_068804_190--Hb_000111_490 Hb_068804_190--Hb_010577_020 Hb_166360_010--Hb_005532_080 Hb_162450_010 Hb_162450_010 Hb_166360_010--Hb_162450_010 Hb_166360_010--Hb_004218_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 38.8635 80.8029 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.04752 0 0.738048 40.1376

CAGE analysis